These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAGGCTTAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGGATTACTACACCCCGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTTTCTTCTATTTTAATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGCAATGCAAAATGGCGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAATCACTGCAAACACAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTTCTTTGATAGGATTATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCCACCACGCAGTACCATTTAGTAGTGATGCATGCAAGCAAACGTGCCGCGCCCAAGAAGGATAATAAAATCGAAAACACAGTACACTATATTTATGACCAGGGAATCC] [+] EMBL BM624602 [ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAGGCTTAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGGATTACTACACCCCGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTTTCTTCTATTTTAATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGCAATGCAAAATGGCGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAATCACTGCAAACACAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTTCTTTGATAGGATTATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCCACCACGCAGTACCATTTAGTAGTGATGCATGCAAGCAAACGTGCCGCGCCCAAGAAGGATAATAAAATCGAAAACACAGTACACTATATTTATGACCAGGGAATCC] consensusID : consensus_423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTGGTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGAGGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGAGCCGACTTACTGTCTGTGTGATCAGATTTCATTCGGCGAAATGATCCTCTGTGATAATGATCTCTGCCCGATCGAGTGGTTCCACTTCAGCTGCGTTTCGCTAATCTCGAAACCGAAGGGACGCTGGTTCTGCCCGAACTGCCGTGGCGACCGGCCGAACGTGATGAAACCGAAAGCACAATTCCTCAAGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAGGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAAGCTTAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGGCTCTCCAGCGTGGGACT] [+] EMBL BM646486 [CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTGGTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGAGGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGAGCCGACTTACTGTCTGTGTGATCAGATTTCATTCGGCGAAATGATCCTCTGTGATAATGATCTCTGCCCGATCGAGTGGTTCCACTTCAGCTGCGTTTCGCTAATCTCGAAACCGAAGGGACGCTGGTTCTGCCCGAACTGCCGTGGCGACCGGCCGAACGTGATGAAACCGAAAGCACAATTCCTCAAGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAGGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAATGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCGTGTTTTTAAGCTTAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGGCTCTCCAGCGTGGGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_423#0 ---------ACCCACGCGTCCGAAACCGAAAGCACAATTCCTGAAGGAGCTGTTTCGCTA 51 consensus_423#1 CCGGCGGCAAGAAGGGCACCGGAAGCGGCAATCACACGGGCAGTGGCAGTGGTGCCGGTG 60 * ** * *** * * ** **** * * * ** ** ** * consensus_423#0 CAACAAG---GAAAAGGAGGAGAAAACGTAGATTGACAATGGGCAAGTTCTTCCCCACGT 108 consensus_423#1 GTGCGAACTCGGGCAAGAAGAAAAAGCGCAAAACGGGCGGCCGTGGATCTCAGGCCACGA 120 * * * * ** ** *** ** * * * * * ***** consensus_423#0 TTCCAGCGCGACCGTAAGCAAGCACCAGCCGCCAAGTTTCCTCTCCCGCCGACTGACGAA 168 consensus_423#1 ----GGGAAGCTCGGGAAGATACGCCGGCGGCCGAAGAAACGATCGATCCGGACGA--GC 174 * * ** * * * ** ** *** * * ** *** ** consensus_423#0 TGTCGTTCGGCTCAACAGAACATATTTTCATAAGCGTTAGGCAACAGTTGTCTTGTTTCG 228 consensus_423#1 CGACTTACTGTCTGTGTGATCAGATTTCATTCGGCGA-----AATGATCCTCTGTGATAA 229 * * * * * ** ** **** * *** ** * *** * consensus_423#0 TGTTTTTAGGCTTAAGCTTTTCTTTTCATTTCTTAACCATTAGTTGGCTCTCCAGCGTGG 288 consensus_423#1 TGATCTCTG-CCCGATCGAGTGGTTCCACTTC--AGCTGC-----GTTTCGCTAATCTCG 281 ** * * * * * * * ** ** *** * * * ** * * * * consensus_423#0 ATTACTACACCCCGACGATCCGATTCGAGGCGCAGATAGGGAAGAACATTCTTTCTTTTT 348 consensus_423#1 AAACCGAAGGGACGCTGGTTCTGCCCGAACTGCCG-TGGCGACCGGCCGAACGTGATGAA 340 * * * ** * * * *** ** * * * ** * * * consensus_423#0 TCTTCTATTTTAATTGTTTTCATTTAGTTCGATAGATTTTATGCTATACAGAGCCTGCGC 408 consensus_423#1 ACCGAAAGCACAATT--CCTCAAGGAGCTGGAGCGCTACAACAAGGAAAAGGAGGAG-AA 397 * * **** *** ** * ** * * * * ** * consensus_423#0 AATGCAAAATGGCGCTTCCTTGAGGGAAATCGTATTAAATTGTACTGTGCCAGTGATGAA 468 consensus_423#1 AACGTAGATTGACAAT---GGGCAGGTTCTTCCCCACGTTTCCAGCGCGACCGTAAGCAA 454 ** * * * ** * * * ** * ** * * * * ** * ** consensus_423#0 TCACTGCAAACACAAATGGCTTTCGATGGTGGTCTAATGGACTGGAAAGGCAACACGCTT 528 consensus_423#1 GCAC--CAGCCGCCAA--GTTTCCTCTCCCG--CCGACTGAC--GAATGTCGTTCGGCTC 506 *** ** * * ** * ** * * * * * *** *** * * *** consensus_423#0 CTTTGATAGGATTATTTCTAGCATCGCAGCGCTCGTTTTGTCATTTGCTGTCTTTCAGCC 588 consensus_423#1 AACAGAACATATTTTCATAAGCGTTA-GGCAACAGTTGTCTTGTTTCGTGTTTTTAAGCT 565 ** *** * *** * ** *** * * *** *** *** *** consensus_423#0 --ACCACGCAGTACCATTTAGTAGTGATGCAT--GCAAGCAAACGTGCCGCGCCCAAGAA 644 consensus_423#1 TAAGCTTTTCTTCTCATTTCTTAATCATTAGTTGGCTCTCCAGCGTGGGACT-------- 617 * * * ***** ** * ** * ** * * **** * consensus_423#0 GGATAATAAAATCGAAAACACAGTACACTATATTTATGACCAGGGAATCC 694 consensus_423#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||