These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGCCCACGCGTCCGGTGCGGGTGGTGCCGGTGTCGTGCTAGTGTCCGGGCTGGCGCACTCACAATCCGCCCATCAGATAGGGCAACCGCCGCCGCCGTCCCTCGTTCACGCGCAGCTTGCCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCAGCATTTCGCGAACGTAGCCGCCAACGCCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTGGCGGTGGCGGTAGCAGTAGCAGTGGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAG] [+] EMBL BM597893 [CCGCCCACGCGTCCGGTGCGGGTGGTGCCGGTGTCGTGCTAGTGTCCGGGCTGGCGCACTCACAATCCGCCCATCAGATAGGGCAACCGCCGCCGCCGTCCCTCGTTCACGCGCAGCTTGCCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCAGCATTTCGCGAACGTAGCCGCCAACGCCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTGGCGGTGGCGGTAGCAGTAGCAGTGGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAG] consensusID : consensus_4230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAGTAGCAATAGTAGTATTATGAGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACAATGATCAAGAGGAGATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGCCGAACCCCAACATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTAACGCGGTGCCATTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACGCAGGACAATCGTGCCCTGGCGGTACGATACGACACCAATCCACCGGCTGCCGCCACAATCAAGCCAGTTTTACGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCAAATAGGCCTACCGAGCACGATGGAAAACAAGGAAA] [+] EMBL BM589554 [CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAGTAGCAATAGTAGTATTATGAGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACAATGATCAAGAGGAGATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGCCGAACCCCAACATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTAACGCGGTGCCATTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACGCAGGACAATCGTGCCCTGGCGGTACGATACGACACCAATCCACCGGCTGCCGCCACAATCAAGCCAGTTTTACGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCAAATAGGCCTACCGAGCACGATGGAAAACAAGGAAA] consensusID : consensus_4230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [CCGGGGCTACATCATGGGTTGTGCTTGTTTCAAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGT] [+] EMBL BM618785 [CCGGGGCTACATCATGGGTTGTGCTTGTTTCAAAGTTCAAGATAATCAAAGGAAAACACCACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCAGCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCAGCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGGTGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGCATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4230#0 CCGCCCACGCGTCCGGTGCGG------GTGGTGCC-GGTGTCGTGCTAGTGTCCGGGCTG 53 consensus_4230#2 ------------------------------------------------------------ consensus_4230#1 CCGCCCACGCGTCCGGGGGGGCACCATGGGCTGCCTAATCATATCGTGCTGTCGGAGCTG 60 consensus_4230#0 GCGCACTCAC-AATCCGCCCATC--AGATAGGGCAACCGCCGCCGCCGTCCCT--CGTTC 108 consensus_4230#2 ------------------------------------------------------------ consensus_4230#1 CCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATGTTCTCC 120 consensus_4230#0 ACGCGCAGCTTGCCCCGCACCAAGCCCTTCAGCAGCAGCTACAGCA-GCATTTCGCGAAC 167 consensus_4230#2 ------------------------------------------------------CCGGGG 6 consensus_4230#1 ACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCGCGGGTGGCGTAAGC 180 consensus_4230#0 GTAGCCGCCAACGCCAGTGCCAACATGAATCAAGTTCAAGATAATCAAAG-GAAAACACC 226 consensus_4230#2 CTA--CATCATGGGTTGTGCTTGTTTCAA---AGTTCAAGATAATCAAAG-GAAAACACC 60 consensus_4230#1 ATGGGAGGCAGTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGGTGGCGGTGGTGGC 240 * ** *** * * * * * consensus_4230#0 ACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCA 286 consensus_4230#2 ACCGCCGGCCAATGACGGCCAACAGCAGCAGCATCAGCTGCAGCACCATCAGATGCAGCA 120 consensus_4230#1 ATCGCGGGCGGA----GGCCAACCACCG-AATGTGCATTCCACTAGTAGCAATAGTAGTA 295 * *** *** * ******* * * * * * ** * * ** * ** * consensus_4230#0 GCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCA 346 consensus_4230#2 GCAAACGCAATCTCTCCAGGCGCAGCACCACCACCAGGCGCTGCAGCAGCAGCTCCAGCA 180 consensus_4230#1 TTATGAGTAACCTTATACCGTTAGATATGAACGATTACGACTACGACGATCATGAAAACA 355 * * ** ** * * * * ** * * * ** consensus_4230#0 GCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGG 406 consensus_4230#2 GCACCACCAGGCGCAGCAGCAGGCCCAGCAGCTGGCCCAGCAGCACGGGCAGCATGGCGG 240 consensus_4230#1 --ATGATCAAGAGGAG--ATCGATTCAGACGAAGACTACATGTACCCGATGTCCCAGC-- 409 * * ** * * ** * *** * * * * * * ** consensus_4230#0 TGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCAT--ATCGTGCTGTCG 464 consensus_4230#2 TGGCCACGGGCATACCCACGGGGGGCACCATGGGCTGCCTAATCAT--ATCGTGCTGTCG 298 consensus_4230#1 CGAACCCCAACATTGACACGAACCGTATCGACGAGATCCCGGCCAAGGAACCGAACATTA 469 * * * *** **** * * * * ** ** * * * consensus_4230#0 GAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATG 524 consensus_4230#2 GAGCTGCCGGAACCGCCGATTCCGGTGTCGGAGATTGGTCCCATCCCACCGCCGCCCATG 358 consensus_4230#1 ACGC-GGTGCCATTGAAGTCTGCGCTGAAGAAGAAAGGCTCCAACCCGGGAACCCCGACG 528 ** * * * * * * ** ** * *** ** *** *** * ** * * consensus_4230#0 TTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCG-CGGGTGG 583 consensus_4230#2 TTCTCCACGCCCAGCCCAACGCTGGCCGGGACGCGCTCGCACGGTTCCAGCG-CGGGTGG 417 consensus_4230#1 CA------GGACAATCGTGCCCTGGC-GGTACGATACGACACCAATCCACCGGCTGCCGC 581 * ** * * ***** ** *** *** **** ** * * * consensus_4230#0 CGTAAGCATGGGAGGCA-GTGGCGGTGGCGG---------TAGCAGTAGCAGTGGGTGGC 633 consensus_4230#2 CGTAAGCATGGGAGGCA-GTAGCGGTGGCGGCGGCGGCGGTAGCAGTAGCAGTGG-TGGC 475 consensus_4230#1 CACAATCAAGCCAGTTTTACGACCACGGATTAGAATATGTTCGCGACCGATGCGTTTCCA 641 * ** ** * ** * ** * ** * * * * consensus_4230#0 GGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGTGCATTCCACTAG 683 consensus_4230#2 GGTGGTGGCATCGCGGGCGGAGGCCAACCACCGAATGT------------ 513 consensus_4230#1 AATAGGCCTACCGAGCACGATGGAAAACAAGGAAA--------------- 676 * * * ** * ** ** *** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||