cluster # 4232

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Anopheles gambiae
cluster # 4232 cluster # 4232 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4232#0 length = 677 sequences # 2

consensus_4232#1 length = 662 sequences # 1

consensusID : consensus_4232#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence

                              [CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATGA]

[+] EMBL BM589539             [CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATGA]
[+] EMBL BM596974             [                      ccgGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCGTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGACGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAATTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTC         ]




>consensus_4232#0
CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAA
CGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCC
GTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGT
ACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAA
AAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTG
CCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCG
CGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGG
CGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAA
GAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAAC
TGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAG
CACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATT
GTATCCTCCAACAATGA

consensusID : consensus_4232#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATG]

[+] EMBL BM596505             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAATG]




>consensus_4232#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGCGTGAAAGCGCACAAAACGGTGTTTGGCTGG
TGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCCGTGCAAGTCAAAAT
GTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGTACGCGAAGCGCGGT
CAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAAAAGAGTTCATCCGT
CGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTGCCCAAATGTCGACC
AGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCGCGGTGCCGGACCGC
CGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGGCGCGCGACAACAGT
TGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAAGAAAGCCGAAAGTC
GGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAACTGCTGGCAGGATAA
TAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAGCACTTCGAAGATTC
ACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATTGTATCCTCCAACAA
TG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4232#0      CCGCATTTTAGAAAATCAAAACAGTGAAAATTCTGTGTGAGCGCGTGAAAGCGCACAAAA 60
consensus_4232#1      -------------CCGCGGACGCGTGGGCGGAC-GCGTGGGCGCGTGAAAGCGCACAAAA 46
                                      *  *   ***      * * *** ********************

consensus_4232#0      CGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCC 120
consensus_4232#1      CGGTGTTTGGCTGGTGATGAACGCGCTAGAAATGTTTTGAACGAATGGAAAGCGTGTGCC 106
                      ************************************************************

consensus_4232#0      GTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGT 180
consensus_4232#1      GTGCAAGTCAAAATGTGGCTGCGAAGCGAGACTAGAGATCGTCGACTGCGTTCAAGTAGT 166
                      ************************************************************

consensus_4232#0      ACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAA 240
consensus_4232#1      ACGCGAAGCGCGGTCAAGTTCAAACCATCCCCACTCAAAGTGGCTAGCCAAAAAGCAAAA 226
                      ************************************************************

consensus_4232#0      AAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTG 300
consensus_4232#1      AAGAGTTCATCCGTCGAACTCGTAGTGTCTTCGTCTCGGCGATCCGTACCATCAGCGGTG 286
                      ************************************************************

consensus_4232#0      CCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCG 360
consensus_4232#1      CCCAAATGTCGACCAGAAGTGTCAACGACGATTGCCGAACCTTCATCTACCTTAGTTTCG 346
                      ************************************************************

consensus_4232#0      CGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGG 420
consensus_4232#1      CGGTGCCGGACCGCCGCTGCTACGCCCAATAATCCACCTGCAAGAAGCATCGTTGCAAGG 406
                      ************************************************************

consensus_4232#0      CGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAA 480
consensus_4232#1      CGCGCGACAACAGTTGGAAAGCCGGTGCGGAATAATCGTCCCACTGCTGCTAGCGGTGAA 466
                      ************************************************************

consensus_4232#0      GAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAAC 540
consensus_4232#1      GAAAGCCGAAAGTCGGCCAGTCGCGAAGAGATTACAATACCGGACGATTGCAAAGAAAAC 526
                      ************************************************************

consensus_4232#0      TGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAG 600
consensus_4232#1      TGCTGGCAGGATAATAACGATCTCACTCTATTCGATGGTACCACTGTCATCGATCAGAAG 586
                      ************************************************************

consensus_4232#0      CACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATT 660
consensus_4232#1      CACTTCGAAGATTCACCCACACACTCCAGCTGTTCTTCGCAGCAACTACCTGCAGGCATT 646
                      ************************************************************

consensus_4232#0      GTATCCTCCAACAATGA 677
consensus_4232#1      GTATCCTCCAACAATG- 662
                      ****************