cluster # 4236

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Anopheles gambiae
cluster # 4236 cluster # 4236 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4236#0 length = 687 sequences # 1

consensus_4236#1 length = 619 sequences # 1
consensus_4236#2 length = 213 sequences # 1

consensusID : consensus_4236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAAACAGAAAACAGTGCGTCGCGGGCAGTGCACAACATTACCCAGACCCGGCAGTGTGTATCTTATCAATCAGCCTTCCAACACGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCACCCCCATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTCTTTTGCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGTGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAAGGATGAACCCGCGCATCGTCATCATCGGGGCCGGTGCGG]

[+] EMBL BM618339             [CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAAACAGAAAACAGTGCGTCGCGGGCAGTGCACAACATTACCCAGACCCGGCAGTGTGTATCTTATCAATCAGCCTTCCAACACGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCACCCCCATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTCTTTTGCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGTGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAAGGATGAACCCGCGCATCGTCATCATCGGGGCCGGTGCGG]




>consensus_4236#0
CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAAACAGAA
AACAGTGCGTCGCGGGCAGTGCACAACATTACCCAGACCCGGCAGTGTGTATCTTATCAA
TCAGCCTTCCAACACGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCG
ATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCC
AACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCACCCCCATAG
CCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGA
AGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGC
GATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTCTTTTGC
CTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGTGCCCCTCGT
AAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGAT
TTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAAGGATGAACCCGC
GCATCGTCATCATCGGGGCCGGTGCGG

consensusID : consensus_4236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCGCAGTTCTAGCGAAATATCTTTGCCCAGGTCGACCCGGAGCTGTCGCCACAGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCCCGTATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCTAGATACACACACACACAGGCAGACACACACACCCTGGA]

[+] EMBL BM632855             [CCGCAGTTCTAGCGAAATATCTTTGCCCAGGTCGACCCGGAGCTGTCGCCACAGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCCCGTATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCTAGATACACACACACACAGGCAGACACACACACCCTGGA]




>consensus_4236#1
CCGCAGTTCTAGCGAAATATCTTTGCCCAGGTCGACCCGGAGCTGTCGCCACAGCCTATT
GTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTC
ACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCT
TCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCCATCCGCACTGCCAACCCCACGGAG
GAAGGCTTACACCAAAGTGGCAACAACAATAGAACACCCCGTATAGCCTCACAAAAGCAT
CATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCTGCTGGGGCGAAGGCGGAAAGAAAG
CGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTATCGATTGGGCGATGATGTGAGACG
GGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCCCCTGTGTAGTGTAGTGTGCTTGAC
GCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCGTAAGGTGGCACACTTTTGCACGCG
ACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGATTTCTAGATACACACACACACAGG
CAGACACACACACCCTGGA

consensusID : consensus_4236#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACCCGGAGCTGTCGCCACGGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA]

[+] EMBL BM590254             [CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACCCGGAGCTGTCGCCACGGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA]




>consensus_4236#2
CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACCCGGAGCTGTCGCCACG
GCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATCTTACCCATTTTTCCGTT
CATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCACGTCGCCCCCCGATAAG
TTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4236#1      ----------------CCGCAG-----TTCTAGCGA--AATATCTTTGCCCAGGTCGACC 37
consensus_4236#2      ----------------CCGCGGACGCGTGGGAGCGATAAATATCTTTGCCCAGGTTGACC 44
consensus_4236#0      CCGGGACGTGACCGTGTCCGGGACCAACGGGAGCAAACAAGGCCGAGGTTCAAA---ACA 57
                                       *   *         *** *  **   *   *  **     ** 

consensus_4236#1      CGGAGCTGT-CGCCACAGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATC 96
consensus_4236#2      CGGAGCTGT-CGCCACGGCCTATTGTGATTTGGTGCTTTCTTTACCTTTTTGCTTAAATC 103
consensus_4236#0      GAAAACAGTGCGTCGCGGGCAGT----GCACAACATTACCCAGACCCGGCAGTGTGTATC 113
                         * * ** ** * * * *  *             *  *   ***     *  *  ***

consensus_4236#1      TTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCA 156
consensus_4236#2      TTACCCATTTTTCCGTTCATTGTCACAGTTGCACCATCGCTCCGTCACGAAGTGTCTCCA 163
consensus_4236#0      TTATCAAT----CAGCCTTCCAACAC-GTTGCACCATCGCTCCGTCACGAAGTGTCTCCA 168
                      *** * **    * *        *** *********************************

consensus_4236#1      CGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCC 216
consensus_4236#2      CGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAA---------- 213
consensus_4236#0      CGTCGCCCCCCGATAAGTTCGTCTTCGTCCGAAGCAGAAGGCTGTAATAATTATCCTTCC 228
                      **************************************************          

consensus_4236#1      ATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACA 276
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      ATCCGCACTGCCAACCCCACGGAGGAAGGCTTACACCAAAGTGGCAACAACAATAGAACA 288
                                                                                  

consensus_4236#1      CCCCGTATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTCCT 336
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      CCACCCCCATAGCCTCACAAAAGCATCATCGAGAGGGTGATATTCTCCCCTCACTCTTTC 348
                                                                                  

consensus_4236#1      GCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGTTA 396
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      CTGCTGGGGCGAAGGCGGAAAGAAAGCGCAGAACGCAAAACAATCATCTTGAGCGCGCGT 408
                                                                                  

consensus_4236#1      TCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAATCC 456
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      TATCGATTGGGCGATGATGTGAGACGGGTCGAGCGAAGGACCCCGGGCGTTTGATGAAAT 468
                                                                                  

consensus_4236#1      CCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCTTGCGCCCCTCG 516
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      CCCCTCTTTTGCCTGTGTAGTGTAGTGTGCTTGACGCTGGTGGCTGGACGAACGATTGCT 528
                                                                                  

consensus_4236#1      TAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCGGAACAAAAGGA 576
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      TGTGCCCCTCGTAAGGTGGCACACTTTTGCACGCGACCGAACCCTCATCCGGAGGCTGCG 588
                                                                                  

consensus_4236#1      TTTCTAGATACACACACACACAGGCAGACACACACACCCTGGA----------------- 619
consensus_4236#2      ------------------------------------------------------------
consensus_4236#0      GAACAAAAGGATTTCCACAAACACACACACACAGGCAGACACACACACCCTGGACGGCAA 648
                                                                                  

consensus_4236#1      ---------------------------------------
consensus_4236#2      ---------------------------------------
consensus_4236#0      GGATGAACCCGCGCATCGTCATCATCGGGGCCGGTGCGG 687