These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [ATCGCCCGAGTGTCATTTCGGAAGAAAGCAGGCAAAGGAACCGAAATAACAAACCGTTCAAAAGCAAAAAAAAATATATAGAAACACAAAACCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATCTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCTGTCGTGCGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTAGTTGTTTTTATCAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCACGAGTCCTGCTGCTTCTTATACGGATGTGATTGGCTCCACGCTTTCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACAATAGGAGATGCGTTACCTTTTACTCTGCTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCACTAACAGCATAATGATTGAAATAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAGCAAAGTGAAGNGGGAN] [+] EMBL AL931712 [ATCGCCCGAGTGTCATTTCGGAAGAAAGCAGGCAAAGGAACCGAAATAACAAACCGTTCAAAAGCAAAAAAAAATATATAGAAACACAAAACCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATCTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCTGTCGTGCGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTAGTTGTTTTTATCAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCACGAGTCCTGCTGCTTCTTATACGGATGTGATTGGCTCCACGCTTTCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACAATAGGAGATGCGTTACCTTTTACTCTGCTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCACTAACAGCATAATGATTGAAATAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAGCAAAGTGAAGNGGGAN] consensusID : consensus_4240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGAAGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTGCAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAGCAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAATAGAAACACAAAATCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTGTTGTTTTTATCAATTTCCCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCATGAGTCCTGCTGCTTCTTATACGGATATGATTGGCTCCACGCTTCCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACATTAGGGAGATGTGTTCCTTTTACTCTGCTTTTCGTTAT] [+] EMBL BM622105 [GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGAAGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTGCAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAGCAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAATAGAAACACAAAATCACTCGGCAAGACACAACAAAACAAGCCTAAGAGGAGGAGCACAGGGCGCAGCACAAAAACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCCGGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTGTTGTTTTTATCAATTTCCCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCATAGCATGAGTCCTGCTGCTTCTTATACGGATATGATTGGCTCCACGCTTCCTCTTATTTTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACAAACATTAGGGAGATGTGTTCCTTTTACTCTGCTTTTCGTTAT] consensusID : consensus_4240#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTTGCGATCGTCGCTAACAGCATAATGATTGAAATAATCGAATCTCATTGAGAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGGAGAAAGCAGCTTTTACCCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCCCTTAACAAAACATGGCAGAAAATTTTAATTGTGAAATGTTTTTTTGAACGAAGGTGTAGCGCTACCCGAAATGTGAAAATCCTTAATGTAGATTTTAGTATTACTTAAGGTAGAACGATACGAGGGAAGAAAGTGCGTAATGGAATGGAAAGTATACGTATCACGAAAATACGACAAATAGAAAGAGAGAAGAGAGTGAAAGATGGCAGTATCGGCCGGTATGAATTCCAGTTGTTGGCAGTTTTTAGCAGTACGAAATTTCACACACACACACACACACACTACAAAAACCCCTAATACAATTCATTCGAACAGTT] [+] EMBL BM627687 [CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTCGTTATTTGATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTTGCGATCGTCGCTAACAGCATAATGATTGAAATAATCGAATCTCATTGAGAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGGAGAAAGCAGCTTTTACCCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCCCTTAACAAAACATGGCAGAAAATTTTAATTGTGAAATGTTTTTTTGAACGAAGGTGTAGCGCTACCCGAAATGTGAAAATCCTTAATGTAGATTTTAGTATTACTTAAGGTAGAACGATACGAGGGAAGAAAGTGCGTAATGGAATGGAAAGTATACGTATCACGAAAATACGACAAATAGAAAGAGAGAAGAGAGTGAAAGATGGCAGTATCGGCCGGTATGAATTCCAGTTGTTGGCAGTTTTTAGCAGTACGAAATTTCACACACACACACACACACACTACAAAAACCCCTAATACAATTCATTCGAACAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4240#0 ------------------------------------------------------------ consensus_4240#1 GGACGCGTGGGCGGAAGTGAAGATGACGAGAGAGGAGAGGATACGACAACAACAGCATGA 60 consensus_4240#2 --------CCGCCCACGCGTCCGAAACAATAGGAGATGCGTTCCTTTTACTCTGTTTTTC 52 consensus_4240#0 ------------------------------------------------------------ consensus_4240#1 AGAAGAGGTGAACTAATTAACGACTGCTTTCGAGAAGAGGCGAGAGAGTGTGTGTGTGTG 120 consensus_4240#2 GTTAT---TTGATTAGTGTGTAGGTAGCGGCAGCGGCTTCTACTGGAATTGTTTTGTTTT 109 consensus_4240#0 -------------------------------ATCGCCCGAGTGTCA-TTTCGGAAGAAAG 28 consensus_4240#1 CAGAAGAAAAGAAACATTAGGCCATGATTGAAGGACTAGACCGTCAACTTTGGAAGAAAG 180 consensus_4240#2 GCGATCGTCGCTAACAGCATA--ATGATTGAAATAATCGAATCTCA--TTGAGAAGCGAA 165 * ** *** ** **** * consensus_4240#0 CA-GGCAAAGGAACCGAAATAACAAACCG-TTCAAAAGCAAAAAAAAATATATAGAAACA 86 consensus_4240#1 CAAGGCAAAGGAACCGAAATAACAAACCGGTTCAAAAGCAAAAAAAA-----TAGAAACA 235 consensus_4240#2 GGGCGCGCGAGAAGC-AATTAGCAAAACCAACGAGAATCCTTAAAAAAAAAGTGAAGGGG 224 ** *** * ** ** **** * * ** * ***** * * consensus_4240#0 CAAAACCACTCGGCAAGACACAACAAAACAAGC-CTAAGAGGAGGAGCACAGGGCGCAGC 145 consensus_4240#1 CAAAATCACTCGGCAAGACACAACAAAACAAGC-CTAAGAGGAGGAGCACAGGGCGCAGC 294 consensus_4240#2 AGAAAGCAGCTTTTACCCAATTTCGAACCTGGAACTGCGTGCGTATGCAGCGGTCGTTCC 284 *** ** * * * ** * * ** * * *** ** ** * consensus_4240#0 ACAAAAACATCTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCTGTCGTGCGGCGCC 205 consensus_4240#1 ACAAAAACATTTCCATGGAGCATGGAAATTAAGCGGGGTTTTTCCCCGTCGTACGGCGCC 354 consensus_4240#2 CTTAACAAAACATGGCAGAAAATTTTAATTGTGAAATGTTTTT-----TTGAACGAAGGT 339 ** * * ** ** **** * ****** * * ** * consensus_4240#0 GGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTTAGTTGTTTTTAT 265 consensus_4240#1 GGGTTCGTTGTGTGAGTTCTAGAGGAAGCTTTTCCTCTGCTTGTTGTT-GTTGTTTTTAT 413 consensus_4240#2 GTAG-CGCTACCCGAAATGTGAAAA------------TCCTTAATGTA-GATTTTAGTAT 385 * ** * ** * * * * *** *** * * ** *** consensus_4240#0 CAATTTCCCTGTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCA 325 consensus_4240#1 CAATTTCCCTTTTTTGCTCTTACGTCGAGTGGTGGGAACTGTTTTGGCACACAAACAGCA 473 consensus_4240#2 TACTTAAGGTAGAACGATACGAGGGAAGAAAGTGCGTAATGGAATGGAAAGTATAC-GTA 444 * ** * * * * * *** * * ** *** * * ** * * consensus_4240#0 TAGCACGAGTCCTGCTGCTTCTTATACGGATGTGATTGGCT--CCACGCTTTCTCTTATT 383 consensus_4240#1 TAGCATGAGTCCTGCTGCTTCTTATACGGATATGATTGGCT--CCACGCTTCCTCTTATT 531 consensus_4240#2 TCACGAAAATACGACAAATAGAAAGAGAGAAGAGAGTGAAAGATGGCAGTATCGGCCGGT 504 * * * * * * * * * ** ** ** * * * * consensus_4240#0 TTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACA 443 consensus_4240#1 TTCCATCGTTGATTAAGCCAGGGGTGATTAATGCAACCCAAACAAACAAAAAAACACACA 591 consensus_4240#2 ATGAATTCCAGTT---GTTGGCAGTTTTTAGCAGTACGAAATTTCACACACACACACACA 561 * ** * * * * ** *** ** ** *** * * ******* consensus_4240#0 AACAATAGG-AGATGCGT--TACCTTTTACTCTGCTTTTCGTTATTTGATTAGTGTGTAG 500 consensus_4240#1 AACATTAGGGAGATGTGT--T-CCTTTTACTCTGCTTTTCGTTAT--------------- 633 consensus_4240#2 CACACTACAAAAACCCCTAATACAATTCATTCGAACAGTT-------------------- 601 *** ** * * * * * ** * ** * consensus_4240#0 GTAGCGGCTGCTCCTGGAATTGTTGTATTGCGATCGTCACTAACAGCATAATGATTGAAA 560 consensus_4240#1 ------------------------------------------------------------ consensus_4240#2 ------------------------------------------------------------ consensus_4240#0 TAATCGAATCTCATGAGCAAGCGAAGGGCGCGCGAGAAGCAATTAGCAAAACCAACGAGA 620 consensus_4240#1 ------------------------------------------------------------ consensus_4240#2 ------------------------------------------------------------ consensus_4240#0 ATCCTTAAGCAAAGTGAAGNGGGAN 645 consensus_4240#1 ------------------------- consensus_4240#2 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||