cluster # 4245

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Anopheles gambiae
cluster # 4245 cluster # 4245 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4245#0 length = 667 sequences # 1

consensus_4245#1 length = 575 sequences # 1
consensus_4245#2 length = 515 sequences # 1

consensusID : consensus_4245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTCGCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTATTTAAAAAAATGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTCTCGTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACATCAGTTTTG]

[+] EMBL BM588121             [CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTCGCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTATTTAAAAAAATGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTCTCGTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACATCAGTTTTG]




>consensus_4245#0
CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAA
CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTC
GCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTT
AAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTATTTAAAAAAA
TGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTACGG
CGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAAC
AACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGATG
ATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATTTC
CACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCT
ATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTCTC
GTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACATC
AGTTTTG

consensusID : consensus_4245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [ATCGCCCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA]

[+] EMBL AL932599             [ATCGCCCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA]




>consensus_4245#1
ATCGCCCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGC
GCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACG
TATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTT
CAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGC
CTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGG
CTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTA
CAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATG
CGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGC
GAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAATCTATCCGCTTTA
TTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA

consensusID : consensus_4245#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACTTTCTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGTTTTGCCCCCCCCGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGTCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT]

[+] EMBL BM634882             [CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAAAACAACACTTTCTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGTTTTGCCCCCCCCGAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAAAACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGTCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT]




>consensus_4245#2
CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAACCAAGCGTTGCGCATGAATCGCCG
ATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTCGCCTATCTACGTATATGCTTGCGT
CGTGAACATTTCGCAAACGTGACTGACACGGGATTTAAAGCTACCTTCAGACGCAATCAC
CTAACGAACTGAGCGTTATTATTGTATCTTTAAAAAAATGATAGCGCCTTTTTGCATCAA
AACAACACTTTCTGAACAGTGGTGTGGATACTTTACGGCGGGTTGGGTTTTGCCCCCCCC
GAACATTTGATACTCAGGAACTTAAAACTACTACAAACAACTTATTACAATTACGCGAGG
AACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGATGATGATAATGCGATGAAAAGCAA
AACAACCCAAATCATCTTGTGGATTGTGTGTAATTTCCACGAAGAGCGAACCGGAAAGGT
CGACAAATAAGGAAAGCCCTGCATAATCAACGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4245#0      CCGAGCATGCTTCACATTTTGCAGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAA 60
consensus_4245#1      ----------ATCGC-CCCGAGGGCTGATCACAATCTTAAGCCCAGATGCGAATTATAAA 49
consensus_4245#2      ------------------------CCACGCGTCCGCTTAAGCCCAGATGCGAATTATAAA 36
                                              *    *     *************************

consensus_4245#0      CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCTGTGTGTTACTTTTATGCTTTATTTC 120
consensus_4245#1      CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTC 109
consensus_4245#2      CCAAGCGTTGCGCATGAATCGCCGATCACGGCTCCGTGTGTTACTTTTATGTTTTATTTC 96
                      ********************************** **************** ********

consensus_4245#0      GCCTATCTACGTATATGCTTGTGGCGTGAACATTTCGCAAACGTGACTGACACGGGATTT 180
consensus_4245#1      GCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTT 169
consensus_4245#2      GCCTATCTACGTATATGCTTGCGTCGTGAACATTTCGCAAACGTGACTGACACGGGATTT 156
                      ********************* * ************************************

consensus_4245#0      AAAGCTACCATCAGACGCAATCCCCTAACGAACTGAGCGTTATTATTGTAT--TTAAAAA 238
consensus_4245#1      AAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAA 229
consensus_4245#2      AAAGCTACCTTCAGACGCAATCACCTAACGAACTGAGCGTTATTATTGTATCTTTAAAAA 216
                      ********* ************ ****************************  *******

consensus_4245#0      AATGATATCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGAGGATACTTTAC 298
consensus_4245#1      AATGATAGCGCCTTTTTGCATCAAAACAACACAAACTGAACAGTGGTGTGGATACTTTAC 289
consensus_4245#2      AATGATAGCGCCTTTTTGCATCAAAACAACACTTTCTGAACAGTGGTGTGGATACTTTAC 276
                      ******* ************************   ************* ***********

consensus_4245#0      GGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAA 358
consensus_4245#1      GGCGGGTTGGGCTTTGAGGACGACGAACATTTGATACTCAGGAACTTAAAACTACTACAA 349
consensus_4245#2      GGCGGGTTGGGTTTTGCCCCCCCCGAACATTTGATACTCAGGAACTTAAAACTACTACAA 336
                      *********** ****    *  *************************************

consensus_4245#0      ACAACTTATTACAATTACGCGAGGAACCGGAAAGGAAGAAAAGGGAAAGAGAAGTAGAGA 418
consensus_4245#1      ACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGA 409
consensus_4245#2      ACAACTTATTACAATTACGCGAGGAACCGGAAAGGAGGAAAAGGGAAAGAGAAGTAGAGA 396
                      ************************************ ***********************

consensus_4245#0      TGATGATAATGCGATGAAAAGCAAAACAACCCTAAATCATCTTGTGGATTGTGTGTAATT 478
consensus_4245#1      TGATGATAATGCGATGAAAAGCAAAACAACCC-AAATCATCTTGTGGATTGTGTGTAATT 468
consensus_4245#2      TGATGATAATGCGATGAAAAGCAAAACAACCC-AAATCATCTTGTGGATTGTGTGTAATT 455
                      ******************************** ***************************

consensus_4245#0      TCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT 538
consensus_4245#1      TCCACGAAGAGCGAACCGGAAAGGCCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT 528
consensus_4245#2      TCCACGAAGAGCGAACCGGAAAGGTCGACAAATAAGGAAAGCCCTGCATAATCAACGAAT 515
                      ************************ ***********************************

consensus_4245#0      CTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAATCGACGTGTTTTC 598
consensus_4245#1      CTATCCGCTTTATTGTGCTTACTGTGTGTGTAATCCCGGCTCAAAAA------------- 575
consensus_4245#2      ------------------------------------------------------------
                                                                                  

consensus_4245#0      TCGTTTCTTAAAATGAAACAGTTCGAAAGTGCTTCAACACGTTCAATACAGCAATGTACA 658
consensus_4245#1      ------------------------------------------------------------
consensus_4245#2      ------------------------------------------------------------
                                                                                  

consensus_4245#0      TCAGTTTTG 667
consensus_4245#1      ---------
consensus_4245#2      ---------