These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACG-ATTTGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTGTGTGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGTGTGTTGTTATCACTATAATTTGGTTTAAAGTTTT] [+] EMBL BM615049 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACG ATTTGATTACGAAATTGTGTTTAACCA ] [+] EMBL BM632960 [ CCGGCAAAGACGAATAATTTTTGGACACACTGTATGC ATTGAAGAGAAACATAGAGAGCAAA AAAGGAACAAACACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCACTATTTTTGAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAATCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTCTGTACGAATTGGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTGTGTGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGTGTGTTGTTATCACTATAATTTGGTTTAAAGTTTT] consensusID : consensus_4249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGGTGTGTGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATTCG] [+] EMBL BM579061 [CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTATGCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTAGATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGGAATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGACGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCTATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTTGTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATATTTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGGCCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTGTGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGGTGTGTGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4249#0 CCGCCCACGCGTCCGCCCACGC-GTCCGGCAAAGACGAATAATTTTTGGACTCACTGTAT 59 consensus_4249#1 ----CCGCTTTTTGATGTAAACTATTCAGCAAAGACGAATAATTTTTGGACTCACTGTAT 56 ** * * * * * * ******************************** consensus_4249#0 GCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTA 119 consensus_4249#1 GCAATTGGAGAGAAACATAGAGAGAAAAGAAAGGAACAAAAACAAAATGGCTCCGATTTA 116 ************************************************************ consensus_4249#0 GATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGG 179 consensus_4249#1 GATGAAGAGTGACAAACGATAAACGCCAACGTCAATCAACACCACCAGTGTGCACACTGG 176 ************************************************************ consensus_4249#0 AATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGA 239 consensus_4249#1 AATGCAGCAGAACAGCGGACAGACACAACACAACACACGTGCCTGCTTGGATGGCGAAGA 236 ************************************************************ consensus_4249#0 CGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCT 299 consensus_4249#1 CGAGAAGAGCGAAGCTGTAGGCGATGGTAGTAGTGTGTAGTGTGTGCGCAAGATGGCTCT 296 ************************************************************ consensus_4249#0 ATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTT 359 consensus_4249#1 ATTTTTAAAGCGCCTCCCCTCGAAAGCTCTATAGCGCTAGGAATTTCCCGTGTCCCGTTT 356 ************************************************************ consensus_4249#0 GTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATAT 419 consensus_4249#1 GTTTTCCACCACATCGCACTAAGGGTTAGTTTTTAAGCAGAAAGCAAAGGGAAGATATAT 416 ************************************************************ consensus_4249#0 TTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGG 479 consensus_4249#1 TTATTAGAATACGCTCAGAAAGGTACGTTCATTTCATCCCGCTCATCCCGTTCTATATGG 476 ************************************************************ consensus_4249#0 CCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTG 539 consensus_4249#1 CCACGTGGCGTCATCGCAATGGAAGCGCCTGGTACTTTGTACGATTTGATTACGAAATTG 536 ************************************************************ consensus_4249#0 TGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGTGGTAGGGTTG- 598 consensus_4249#1 TGTTTAACCATCCCTCAACAGCAACCGGTTGGTCAGTCAGACGAAGTGAGGTAGGGGTGG 596 ************************************************ ******* ** consensus_4249#0 TGTGTATGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATCACGCGCGTGTGTGT 658 consensus_4249#1 TGTGTGTGTCTCTCTTTGTTTTCCACATCCCATCACAATGACGATT-CG----------- 644 ***** *************************************** ** consensus_4249#0 GTGTTGTTATCACTATAATTTGGTTTAAAGTTTT 692 consensus_4249#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||