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Anopheles gambiae
cluster # 4251 cluster # 4251       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4251#0 length = 843 sequences # 2  
consensus_4251#1 length = 624 sequences # 1  

consensusID : consensus_4251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 843
fasta sequence
                              [GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGTTACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCC-AAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCAGCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGCATG]

[+] EMBL BX617880             [GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGTTACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCC AAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX621970             [                                                                                           AACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGGCGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCCAAAAAGTGAAGCCAAAAGATTTAAAAAGCACACATGTGCGGCCATGATGGCCCCAGCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGCATG]


>consensus_4251#0 GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGT TACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCG AGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACC GGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTA TAACCCAAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCA GCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGC AAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTT ATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCA ACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTA TGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGT TTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATC TTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCA AGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTT TCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGC ATG



consensusID : consensus_4251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence
                              [GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGACGGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCGGGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACGAAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAGCCGAAAGGATTAACACGCACACAT]

[+] EMBL BX468698             [GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGACGGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCGGGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACGAAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAGCCGAAAGGATTAACACGCACACAT]


>consensus_4251#1 GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTT ATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGAC GGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGG TCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTG TCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGA GCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCG GGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCG ATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTA TCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACG AAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAG CCGAAAGGATTAACACGCACACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4251#0      GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGT 60
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      TACTGACTGGTGAAAGTATACCGAGCGATAGAACAA-ACACAAACGTCTATTTGG-ACGT 118
consensus_4251#1      -----------------GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGT 43
                                         * **  *   ** *  * * *     ** **        **

consensus_4251#0      CGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCG-GTGCGCGATGTACTT 177
consensus_4251#1      AAATTAGTATTAC-TGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCC 102
                        *   * *     ** ***  ** **    ****  *     * *  * * *    *  

consensus_4251#0      ACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACT 237
consensus_4251#1      ACCCGACGGTACCAGGACGGAG-CAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACC 161
                      *** ** ** *    * ** ** * * * *  *  ** *  * * * *  ****  *** 

consensus_4251#0      GTATAACCCAAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCC 297
consensus_4251#1      CTTGCACCCG----TGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCG 217
                       *   ****     ** *  *      *    *      * ***  ***   *  ** * 

consensus_4251#0      CCAGCGAATTAGGAAA-GTAGTGT-ATGATAGGGTACAATTGAAATGAGA--AAACTCGT 353
consensus_4251#1      CAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTT 277
                      * * **   ***  *  *** ***  * *  * ***    *    **     ** * * *

consensus_4251#0      TAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTAC-CGTACCGGGAAATATGGAAA 412
consensus_4251#1      CACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGT-CGCCGG 336
                       *        *** *    ******* **  ** **    * ***       *  *    

consensus_4251#0      ACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGG 472
consensus_4251#1      ACCGCCGGATCAAGCGGCGAAC----CGGGGGACCGGGAAGG--ATCGCGAAAGNCCCCG 390
                      *** **  ***     * * **    * * ***   **** *  * **  ** *   * *

consensus_4251#0      GATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCA 532
consensus_4251#1      GTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGG 450
                      * *     ** **  *      * *    * *    *    *      *           

consensus_4251#0      GCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATC 592
consensus_4251#1      ACGTCGAAGGGGCACCGTGTGCT-----ATATGTATCCTAGGACGAGCAATCCGGTGCGC 505
                       *   * * *      ** ** *      * *   * ***  ****    *  * *   *

consensus_4251#0      GTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAA 652
consensus_4251#1      G---ATGTACTTACCGGGATGGGAG-GGAGGCGTAGACGAAACAGATGTATCGGCGATGA 561
                      *   ****  **   *  *   * * *** **  ****  ****     *     *** *

consensus_4251#0      AATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTA 712
consensus_4251#1      ------TTGATGGTACGCAACACTGGTATAAC----CCAGAG----AGTGAAGCCGAAAG 607
                            *   *  **        * ** ***     * ** *    **** * *      

consensus_4251#0      GTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGA 772
consensus_4251#1      GATTAACACGCACACAT------------------------------------------- 624
                      * * * ** * *   *                                            

consensus_4251#0      AATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACAT 832
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      CTACATGCATG 843
consensus_4251#1      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)