These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence [GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGTTACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCC-AAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCAGCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGCATG] [+] EMBL BX617880 [GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGTTACTGACTGGTGAAAGTATACCGAGCGATAGAACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCC AAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCCCCAGC ] [+] EMBL BX621970 [ AACAAACACAAACGTCTATTTGGACGTCGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGATGGGAGGGAGGCGTAGGCGAAAATGTATCGCGATGATTGATGGTCCGCAACACTGTATAACCCAAAAAGTGAAGCCAAAAGATTTAAAAAGCACACATGTGCGGCCATGATGGCCCCAGCGAATTAGGAAAGTAGTGTATGATAGGGTACAATTGAAATGAGAAAACTCGTTAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTACCGTACCGGGAAATATGGAAAACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGGGATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCAGCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATCGTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAAAATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTAGTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGAAATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACATCTACATGCATG] consensusID : consensus_4251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGACGGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCGGGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACGAAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAGCCGAAAGGATTAACACGCACACAT] [+] EMBL BX468698 [GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGTAAATTAGTATTACTGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCCACCCGACGGTACCAGGACGGAGCAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACCCTTGCACCCGTGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCGCAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTTCACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGTCGCCGGACCGCCGGATCAAGCGGCGAACCGGGGGACCGGGAAGGATCGCGAAAGNCCCCGGTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGGACGTCGAAGGGGCACCGTGTGCTATATGTATCCTAGGACGAGCAATCCGGTGCGCGATGTACTTACCGGGATGGGAGGGAGGCGTAGACGAAACAGATGTATCGGCGATGATTGATGGTACGCAACACTGGTATAACCCAGAGAGTGAAGCCGAAAGGATTAACACGCACACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4251#0 GTCGCCGGACCGCCGGATCAAGCGGCAACCGGGGACCGGGAAGGATCGCGAAAGCCCCGT 60 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 TACTGACTGGTGAAAGTATACCGAGCGATAGAACAA-ACACAAACGTCTATTTGG-ACGT 118 consensus_4251#1 -----------------GAATCGGCCACGAGGATGAGAGATTGTTGTTTAACGACTGTGT 43 * ** * ** * * * * ** ** ** consensus_4251#0 CGAGGGGCACCGTGTGCTATATTTATCCTAGGACGAGCAATCCG-GTGCGCGATGTACTT 177 consensus_4251#1 AAATTAGTATTAC-TGTTATTATTTTCGCGTGACGCTCGGGTTGTGCTCCCCAAAACCCC 102 * * * ** *** ** ** **** * * * * * * * consensus_4251#0 ACCGGATGGGAGGGAGGCGTAGACGAAAATGTATCGCGATGATTGATGGTCCGCAACACT 237 consensus_4251#1 ACCCGACGGTACCAGGACGGAG-CAAGACTTAAAGGCAAAAAATAAAGCCCCGCCGCACC 161 *** ** ** * * ** ** * * * * * ** * * * * * **** *** consensus_4251#0 GTATAACCCAAAATTGAAGCCAAAAGATTTAACAAGCACACATGTGCGGCCATGATGGCC 297 consensus_4251#1 CTTGCACCCG----TGGATTCGGTCAGTGCTGCTGCTGAAAATGCTCGGTGGTAGTGCCG 217 * **** ** * * * * * *** *** * ** * consensus_4251#0 CCAGCGAATTAGGAAA-GTAGTGT-ATGATAGGGTACAATTGAAATGAGA--AAACTCGT 353 consensus_4251#1 CAATCGTTATAGCCAGCGTACTGTCGTTAAGGCGTATCGGTAGTTTGTAGCCAATCCCTT 277 * * ** *** * *** *** * * * *** * ** ** * * * consensus_4251#0 TAGAAGCAAGATCGTGTGACTGAGCGCACTTAACAGTAC-CGTACCGGGAAATATGGAAA 412 consensus_4251#1 CACTCATTTAATCCTTCACCTGAGCGTACAAAAGAGCGTGCCTACTTCTCCGT-CGCCGG 336 * *** * ******* ** ** ** * *** * * consensus_4251#0 ACCCCCTTATCGTTTAGTGTACAGGACAGCGGATTAGGAACGAAACCGAAAATGTATCGG 472 consensus_4251#1 ACCGCCGGATCAAGCGGCGAAC----CGGGGGACCGGGAAGG--ATCGCGAAAGNCCCCG 390 *** ** *** * * ** * * *** **** * * ** ** * * * consensus_4251#0 GATCTGCAACGGGCTAGCAGTCAGCCGTTGTTTTCGGTGTGCCGATGGAGAATCTCCGCA 532 consensus_4251#1 GTTTACTGACTGGTGAAAGTATACCGAGCGATAGAAGCAAACGAGCAAACGTCTATTTGG 450 * * ** ** * * * * * * * * consensus_4251#0 GCACGGTATGTTTTTTGTTTGTTTGTTGGTTTTAGTTCTATTACGAAGCTTTGGTTAATC 592 consensus_4251#1 ACGTCGAAGGGGCACCGTGTGCT-----ATATGTATCCTAGGACGAGCAATCCGGTGCGC 505 * * * * ** ** * * * * *** **** * * * * consensus_4251#0 GTTTATGTTTTTTTGGCAACAAGGGTGGAAGCAAAGACACAACAACCACAAAAAAGATAA 652 consensus_4251#1 G---ATGTACTTACCGGGATGGGAG-GGAGGCGTAGACGAAACAGATGTATCGGCGATGA 561 * **** ** * * * * *** ** **** **** * *** * consensus_4251#0 AATACATCTTTAATATAGTGAGATAGTGTAATTTGGCTAGGGCGCCAGTGCAACGAGCTA 712 consensus_4251#1 ------TTGATGGTACGCAACACTGGTATAAC----CCAGAG----AGTGAAGCCGAAAG 607 * * ** * ** *** * ** * **** * * consensus_4251#0 GTTCAGCAAGTAAGTAAGCAAGTAGCGAATTTCGCAACAGAAAAAAACCAGAAAAAAAGA 772 consensus_4251#1 GATTAACACGCACACAT------------------------------------------- 624 * * * ** * * * consensus_4251#0 AATATTTTTCCACTTTCCACTCGTAGTTGAATTTGAATACCACGAAGAAAATATACACAT 832 consensus_4251#1 ------------------------------------------------------------ consensus_4251#0 CTACATGCATG 843 consensus_4251#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||