These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1076 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCGCCGTAAGCGTGTGCGGGGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCGTCCTGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAAGAATGGCGTGTGTTCGTCGTCAAACACGCGCACACAACATACACACAGCTATATTATGCACATACACTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTCTGCGATTTACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAAAACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTACATTTCCCGCTGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATCGTTGCAACGTTGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGGACGAGTTTTTTTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAGCGTTCGTGTCCGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTGCGGCGTTTGCAGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTGTGTTTTAAATCGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACAACACTA] [+] EMBL BM647789 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCGCCGTAAGCGTGTGCGGGGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCGTCCTGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAAGAATGGCGTGTGTTCGTCGTCAAACACGCGCACACAACATACACACAGCTATATTATGCACATACACTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTCTGCGATTTACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAAAACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGT ] [+] EMBL BX608962 [ ttatATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTTTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGG ATGCCAATCAAAACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTACATTTCCCGCTGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATCGTTGCAACGTTGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGGACGAGTTTTTTTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAGCGTTCGTGTCCGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTGCGGCGTTTGCAGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTGTGTTTTAAATCGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACAACACTA] consensusID : consensus_4264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [AAAATGGAGTGTGACCGGCTGTTTTCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTTCCCCTCTTCCGGTCATCGAATGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGAAAAAAGAAAGGCGTGTGTTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTATATTATGCACATACATTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTTGTCTGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTTCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCAATCAAAAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCG] [+] EMBL BX608552 [AAAATGGAGTGTGACCGGCTGTTTTCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTTCCCCTCTTCCGGTCATCGAATGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGAAAAAAGAAAGGCGTGTGTTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTATATTATGCACATACATTACACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTTGTCTGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTTTCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCTTTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTGCTACTAACAATTAAAAGTGATCGTCACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACGTACTGGGGACGGATCGCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCAATCAAAAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCACCACGCAAAACCACCCACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4264#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGCACAACGGACGAAGAGTACGATTCCCCATCG 60 consensus_4264#1 ------------------------------------AAAATGGAGTGTGACCGGCTGTTT 24 * **** ** * * consensus_4264#0 CCGTAAGCGTGTGCGG---GGAAAATGGAGTGTGACCAGCTGTTTTGGGGGGAGAAAGCG 117 consensus_4264#1 TCGGGGGAGAAAGCGTCCTGGGGCGTGTCGTCTGTTCCCCTCTTCCGGTCATCGAA---- 80 ** * * *** ** ** ** ** * ** ** ** *** consensus_4264#0 TCCTGTACATTTTAAATCAGGTGGTTTTAGGTTAAAACCGGGAAAAA-GAATGGCGTGTG 176 consensus_4264#1 ---TGTACATTTTAAATCAGTTGGTTTTAGGTTAAACCCGGGAAAAAAGAAAGGCGTGTG 137 ***************** *************** ********** *** ******** consensus_4264#0 TTCGTCGTCAAACACG---CGCACACAACATACACACAGCTATATTATGCACATACACTA 233 consensus_4264#1 TTGGTCGTCAAACAGGTGTCGCACACAACATACACACAGCTATATTATGCACATACATTA 197 ** *********** * ************************************** ** consensus_4264#0 CACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTCGTC 293 consensus_4264#1 CACAGCAGGGATACAGAGAAGATACACAAAACACACGCAGCCAAACACAATGCACTTGTC 257 ******************************************************** *** consensus_4264#0 TGCGATTTACTCTTATTTTTGGCTTATAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTT 353 consensus_4264#1 TGCGATTTACTCTAATTTTTGTCTTGTAGGTTGATAAGAGAGAATGCGTCGTTTTTTTTT 317 ************* ******* *** ********************************** consensus_4264#0 ---CTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCT 410 consensus_4264#1 TCTCTCTCTCTTTAGGATATTTAACGTTTGGCTATAGCTTATGATGGTAAATTGTGTTCT 377 ********************************************************* consensus_4264#0 TTGCTTATTTGTTTCTTTTCTCCCTTTTTTTTTTGCTACTAACAATTAAAAGTGATCGTC 470 consensus_4264#1 TTGCTTATTTGTTTCTTTTCTCCCTTTTTTTT--GCTACTAACAATTAAAAGTGATCGTC 435 ******************************** ************************** consensus_4264#0 ACACACACACAAAAACACACATGCCAACACACTTGGGGCATAACGTACTGGGGACGGATC 530 consensus_4264#1 ACACACACACAAAAGCACACATGCAAACACACTTGGGGCATAACGTACTGGGGACGGATC 495 ************** ********* *********************************** consensus_4264#0 GCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGCCAATCAA 590 consensus_4264#1 GCCCGTGTGTAATGATAGAGCTGCAACCGGAAATGGAATGTTGTTGGATATGC-AATCAA 554 ***************************************************** ****** consensus_4264#0 AACAGAAAAATGAAAAAAAGAAAAACGGGCACGAGGAGACCCGCACCACGCAAAACCACC 650 consensus_4264#1 AAAAGAAAAATGAAAAGAAGAAAAACGGGCACGAGGAAACCCGCACCACGCAAAACCACC 614 ** ************* ******************** ********************** consensus_4264#0 CACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCGCTGTA 710 consensus_4264#1 CACGTATGCAATTTAGTGCGTAATTTATGTGTAACTAACTAATTTAAGGGTACCG----- 669 ******************************************************* consensus_4264#0 CATTTCCCGCTGAAAACACAAGGCGCACGCATTTTACGCTTCGCGTCTCCTAACGGTATC 770 consensus_4264#1 ------------------------------------------------------------ consensus_4264#0 GTTGCAACGTTGTACAAAGTAGAGGATAGTGTGACTGTGTGAGTGCAGGGCATGGCAGGG 830 consensus_4264#1 ------------------------------------------------------------ consensus_4264#0 ACGAGTTTTTTTTTTATTTTTGTTCATTATTGTTCTCCGATGATGTGAACTTTTCGTTAG 890 consensus_4264#1 ------------------------------------------------------------ consensus_4264#0 CGTTCGTGTCCGCTCCCTACAAGACATTATTAAGCGGGCAAAATGCGTAAAGATCGGTTG 950 consensus_4264#1 ------------------------------------------------------------ consensus_4264#0 CGGCGTTTGCAGCATTCAAACTACATTCTGTTTCTATGTATGAGCGTGCGTGTGTGTTTG 1010 consensus_4264#1 ------------------------------------------------------------ consensus_4264#0 TGTTTTAAATCGTCAAGAGTGTTCCTCTTATAAGATTAGCACAGTTTTACACTTGCAACA 1070 consensus_4264#1 ------------------------------------------------------------ consensus_4264#0 ACACTA 1076 consensus_4264#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||