cluster # 4267

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Anopheles gambiae
cluster # 4267 cluster # 4267 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4267#0 length = 778 sequences # 2

consensus_4267#1 length = 368 sequences # 1

consensusID : consensus_4267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 778
fasta sequence

                              [TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCATTTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCAACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCATGTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGAATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATTAATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACTGCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATCCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT]

[+] EMBL BX620767             [TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCATTTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCAACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCATGTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGAATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATTAATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACTGCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATCCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT]
[+] EMBL BX612933             [                                           TACGTAGGAATGAGCATTTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTTTTGCCATGGTGATAGCTTCGCAACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCATGTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGAATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATTAATTTCCGAAAATGATGATTTACAGAAATTGATAGCTC  AAAGAAGACAAAATACGACTGCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATCCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATTATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAAT TTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAAC                                                                                ]




>consensus_4267#0
TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCAT
TTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCA
ACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCAT
GTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGA
ATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATT
AATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACT
GCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAATGAATC
CGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGC
TCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTA
TGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATT
GAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAAT
CCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATT
TTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT

consensusID : consensus_4267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [CCGATGCAATTCAATCGATCATCTTCAACCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTAATA]

[+] EMBL BM592025             [CCGATGCAATTCAATCGATCATCTTCAACCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTAATA]




>consensus_4267#1
CCGATGCAATTCAATCGATCATCTTCAACCGCAAATGGCACCACTGCTGGAGGAATGCAA
TTCAATCGATCATCTTCAACCGCGCTAGCTCAAAAGTAACTGTAAATGTTTCAACGAAGG
TGCAGAAGGAATCCTTGAAAAATATGTTATGATGTACTCTTATTATGAAATGAAACGATG
GTGGTTTATCTGAATTGCAGAATACAATTGAAATTGAAAGTAAAAGCATGCATAGTAGTG
AATAAATTGTAATTCTAGTGAAATTTAATCCGTACGACAATTCCTCAATAAAATAGGAGA
AAGCAACGCTCAAAACACTGAAATAAATTTTCTGCTATGTAGGATACATGAAGCGTAATA
AAGTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4267#0      TGAAACACGTTCCATTAAAGTGAAGCAGATAAACGATTCTCGCTACGTAGGAATGAGCAT 60
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      TTACAACGTTGTAGTGCTATGTCTAATAACTGCCCCTGTTGCCATGGTGATAGCTTCGCA 120
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      ACAAGATGCTTCCTTTGCGTTTGTTGCATTAGCTGTCATATTTTGCTGTTTTCTCAGCAT 180
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      GTTACTCATATTCGTTCCGAAGGTGATAGAAGTATTGCGACATCCAAAGGATAAGGTCGA 240
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      ATCCAAATTCAGCAATGATACTGGAATTTCAAAGGAAGACGAGGAACGATACCAAAAATT 300
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      AATTTCCGAAAATGATGATTTACAGAAATTGATAGCTCAAAAAGAAGACAAAATACGACT 360
consensus_4267#1      ------------------------------------------------------------
                                                                                  

consensus_4267#0      GCTCAAGCAGCGACTAACAGAACGGGAAAATAAAAATACTGCACAACCTTTTAA-TGAAT 419
consensus_4267#1      --------------------------------CCGATGCAATTCAATCGATCATCTTCAA 28
                                                         ** *    *** *  * *  *  * 

consensus_4267#0      CCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAG 479
consensus_4267#1      CCGCAAATGGCACCACTGCTGGAGGAATGCAATTCAATCGATCATCTTCAACCGCGCTAG 88
                      ************************************************************

consensus_4267#0      CTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTT 539
consensus_4267#1      CTCAAAAGTAACTGTAAATGTTTCAACGAAGGTGCAGAAGGAATCCTTGAAAAATATGTT 148
                      ************************************************************

consensus_4267#0      ATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAAT 599
consensus_4267#1      ATGATGTACTCTTATTATGAAATGAAACGATGGTGGTTTATCTGAATTGCAGAATACAAT 208
                      ************************************************************

consensus_4267#0      TGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAA 659
consensus_4267#1      TGAAATTGAAAGTAAAAGCATGCATAGTAGTGAATAAATTGTAATTCTAGTGAAATTTAA 268
                      ************************************************************

consensus_4267#0      TCCATACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAAT 719
consensus_4267#1      TCCGTACGACAATTCCTCAATAAAATAGGAGAAAGCAACGCTCAAAACACTGAAATAAAT 328
                      *** ********************************************************

consensus_4267#0      TTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTATATTTTAAAAAGTGTATATTTT 778
consensus_4267#1      TTTCTGCTATGTAGGATACATGAAGCGTAATAAAGTA-ATA------------------ 368
                      ************************************* **