cluster # 4269

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Anopheles gambiae
cluster # 4269 cluster # 4269 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4269#0 length = 692 sequences # 1

consensus_4269#1 length = 674 sequences # 1
consensus_4269#2 length = 605 sequences # 1

consensusID : consensus_4269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [CCGGTTGACGAGAGCGGTCATAAAGCACTAAGCATCCTAAACATCTGAAGTACGAGACAGCAGTAAAAATAAAGAGATAATAAAAAAAGGGAAATGAAAAAAACGAATGTTGAAATTGGCGAAGACAGTTGCGGATATCACGACAATGGCGCAAACCACGCTCCCAGATCGAAGCCCAATAAAGGAAACAAGTTGCGGAAGGCGCTAAAGTTGGAGAGAAAAAGAAATATGCTACTAGTCGCTAAACTCCAGAAGATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATGGAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATTTCAATGAACTCAATCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATAAAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGGCATCCATGGAGCTCGCCGGCATCACAGACGAACACACTAAAAACAACGTCTTTAAGGTAAAGGCCGGACCATTACTACTGGAAACCTTGGGAGGAACACCAACCCTAGCATTCCCCGACGTAGCTATTGCACCATACTCAAACGCAATGAAACGGTTGAAAGATCTGTTTGGATCCCGGGAATATCGTCTAGTACAGCGTCAAAA]

[+] EMBL BM653358             [CCGGTTGACGAGAGCGGTCATAAAGCACTAAGCATCCTAAACATCTGAAGTACGAGACAGCAGTAAAAATAAAGAGATAATAAAAAAAGGGAAATGAAAAAAACGAATGTTGAAATTGGCGAAGACAGTTGCGGATATCACGACAATGGCGCAAACCACGCTCCCAGATCGAAGCCCAATAAAGGAAACAAGTTGCGGAAGGCGCTAAAGTTGGAGAGAAAAAGAAATATGCTACTAGTCGCTAAACTCCAGAAGATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATGGAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATTTCAATGAACTCAATCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATAAAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGGCATCCATGGAGCTCGCCGGCATCACAGACGAACACACTAAAAACAACGTCTTTAAGGTAAAGGCCGGACCATTACTACTGGAAACCTTGGGAGGAACACCAACCCTAGCATTCCCCGACGTAGCTATTGCACCATACTCAAACGCAATGAAACGGTTGAAAGATCTGTTTGGATCCCGGGAATATCGTCTAGTACAGCGTCAAAA]




>consensus_4269#0
CCGGTTGACGAGAGCGGTCATAAAGCACTAAGCATCCTAAACATCTGAAGTACGAGACAG
CAGTAAAAATAAAGAGATAATAAAAAAAGGGAAATGAAAAAAACGAATGTTGAAATTGGC
GAAGACAGTTGCGGATATCACGACAATGGCGCAAACCACGCTCCCAGATCGAAGCCCAAT
AAAGGAAACAAGTTGCGGAAGGCGCTAAAGTTGGAGAGAAAAAGAAATATGCTACTAGTC
GCTAAACTCCAGAAGATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAG
GAAAGCATTGACATGGAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGC
TCCACACTAGCTATTTCAATGAACTCAATCTCTGCGGTATCTATAAACATTCCGGAATGT
AAACCGCTCGATATAAAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTA
TTAGAGGCATCCATGGAGCTCGCCGGCATCACAGACGAACACACTAAAAACAACGTCTTT
AAGGTAAAGGCCGGACCATTACTACTGGAAACCTTGGGAGGAACACCAACCCTAGCATTC
CCCGACGTAGCTATTGCACCATACTCAAACGCAATGAAACGGTTGAAAGATCTGTTTGGA
TCCCGGGAATATCGTCTAGTACAGCGTCAAAA

consensusID : consensus_4269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [CCGCGAGTGTAAAAAGAGGACGCCTCTGGGAGGGCTACTCGATAAATGTACGCCTCTGGGAGGGCTGCAAAAAAAAATGAAGAAATCAAATATATATGTAATAATGATACTAATAAAAAAAAAACGGTACGCCTCTGGGAGGGCTACTTGTAACATGAGGACGCCTCCGGGAGGGCTACTCGAAAATGTATGCCTCTGGGAGGGCTGCAAAAAATATATATAACACATTGAACGGACAAAATTTTAATCTTATTTTTTTTTAGTAAGCCCAATAAAGGAAACAAGTTGCGGAAGGCGCTAAAGTTGGAGAGAAAAAGAAATATGCTACTAGTCGCTAAACTCCAGAAGATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATGGAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATTTCAATGAACTCACTCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATAAAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGGCATCCATGGAGCTCGCCGGCATCACAGACGAAAACACTAAAAACAACGTCTTTAAGGTAAAGGCCGGACCATTACTACTGGAAACCTTGGGAGG]

[+] EMBL BM590092             [CCGCGAGTGTAAAAAGAGGACGCCTCTGGGAGGGCTACTCGATAAATGTACGCCTCTGGGAGGGCTGCAAAAAAAAATGAAGAAATCAAATATATATGTAATAATGATACTAATAAAAAAAAAACGGTACGCCTCTGGGAGGGCTACTTGTAACATGAGGACGCCTCCGGGAGGGCTACTCGAAAATGTATGCCTCTGGGAGGGCTGCAAAAAATATATATAACACATTGAACGGACAAAATTTTAATCTTATTTTTTTTTAGTAAGCCCAATAAAGGAAACAAGTTGCGGAAGGCGCTAAAGTTGGAGAGAAAAAGAAATATGCTACTAGTCGCTAAACTCCAGAAGATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATGGAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATTTCAATGAACTCACTCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATAAAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGGCATCCATGGAGCTCGCCGGCATCACAGACGAAAACACTAAAAACAACGTCTTTAAGGTAAAGGCCGGACCATTACTACTGGAAACCTTGGGAGG]




>consensus_4269#1
CCGCGAGTGTAAAAAGAGGACGCCTCTGGGAGGGCTACTCGATAAATGTACGCCTCTGGG
AGGGCTGCAAAAAAAAATGAAGAAATCAAATATATATGTAATAATGATACTAATAAAAAA
AAAACGGTACGCCTCTGGGAGGGCTACTTGTAACATGAGGACGCCTCCGGGAGGGCTACT
CGAAAATGTATGCCTCTGGGAGGGCTGCAAAAAATATATATAACACATTGAACGGACAAA
ATTTTAATCTTATTTTTTTTTAGTAAGCCCAATAAAGGAAACAAGTTGCGGAAGGCGCTA
AAGTTGGAGAGAAAAAGAAATATGCTACTAGTCGCTAAACTCCAGAAGATGAAGTTTAAG
AACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATGGAACCACGACAC
TCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATTTCAATGAACTCA
CTCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATAAAGGACGAGATC
GATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGGCATCCATGGAGCTCGCCGGC
ATCACAGACGAAAACACTAAAAACAACGTCTTTAAGGTAAAGGCCGGACCATTACTACTG
GAAACCTTGGGAGG

consensusID : consensus_4269#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CCGCTCAGGATCAAAATGGCGTTTTCTTTTTTACAAAGAAGCGAAATATTCCATAGGCTATGACTTCAAATGTATGCGTGGATTGTTTCGAAAGTCAGTGTTCACGCTAGAGTACGGTGCTTAGCATGAAGCGTGATCTTCCAGATATGTTTTACGGTTCGGTACGAATGTGAAATTTTTTATCAATTTTAGTCAAACTAATTCAAATTGTAGTTGGTAAATTGAGGCAGTTCTCTGGAATTATAGAACGTTGATACACATATAAAATACGCCTCTGGGATGGCTATGTGTAAAGGAGAAAAATCCCCAGGAGGGCTACTCAGAAAATGAACACCTCTGGGAGGGCTGCAAAACAAAAAAGAAGAATAAGACAAAAATATATATACTAATAATTAAAAAAAAGAATAAGGTACGCCTCTGGGAGGGCTACTTGTCACACGAAGACGCCTAGGGAGGGCTACTCGAAAATGTACGCCTCTGGGAGGGCTACAATAATAATAATAATAATGAACGCCTCTGAGAGGGCCGAGCGTAAAAAGAGAACGCCTCTGGGAGGGCTACTCGATAAATGAACGCCTCTGAGAGGGCTGCAAAAAAAAAGAAGA]

[+] EMBL BM633086             [CCGCTCAGGATCAAAATGGCGTTTTCTTTTTTACAAAGAAGCGAAATATTCCATAGGCTATGACTTCAAATGTATGCGTGGATTGTTTCGAAAGTCAGTGTTCACGCTAGAGTACGGTGCTTAGCATGAAGCGTGATCTTCCAGATATGTTTTACGGTTCGGTACGAATGTGAAATTTTTTATCAATTTTAGTCAAACTAATTCAAATTGTAGTTGGTAAATTGAGGCAGTTCTCTGGAATTATAGAACGTTGATACACATATAAAATACGCCTCTGGGATGGCTATGTGTAAAGGAGAAAAATCCCCAGGAGGGCTACTCAGAAAATGAACACCTCTGGGAGGGCTGCAAAACAAAAAAGAAGAATAAGACAAAAATATATATACTAATAATTAAAAAAAAGAATAAGGTACGCCTCTGGGAGGGCTACTTGTCACACGAAGACGCCTAGGGAGGGCTACTCGAAAATGTACGCCTCTGGGAGGGCTACAATAATAATAATAATAATGAACGCCTCTGAGAGGGCCGAGCGTAAAAAGAGAACGCCTCTGGGAGGGCTACTCGATAAATGAACGCCTCTGAGAGGGCTGCAAAAAAAAAGAAGA]




>consensus_4269#2
CCGCTCAGGATCAAAATGGCGTTTTCTTTTTTACAAAGAAGCGAAATATTCCATAGGCTA
TGACTTCAAATGTATGCGTGGATTGTTTCGAAAGTCAGTGTTCACGCTAGAGTACGGTGC
TTAGCATGAAGCGTGATCTTCCAGATATGTTTTACGGTTCGGTACGAATGTGAAATTTTT
TATCAATTTTAGTCAAACTAATTCAAATTGTAGTTGGTAAATTGAGGCAGTTCTCTGGAA
TTATAGAACGTTGATACACATATAAAATACGCCTCTGGGATGGCTATGTGTAAAGGAGAA
AAATCCCCAGGAGGGCTACTCAGAAAATGAACACCTCTGGGAGGGCTGCAAAACAAAAAA
GAAGAATAAGACAAAAATATATATACTAATAATTAAAAAAAAGAATAAGGTACGCCTCTG
GGAGGGCTACTTGTCACACGAAGACGCCTAGGGAGGGCTACTCGAAAATGTACGCCTCTG
GGAGGGCTACAATAATAATAATAATAATGAACGCCTCTGAGAGGGCCGAGCGTAAAAAGA
GAACGCCTCTGGGAGGGCTACTCGATAAATGAACGCCTCTGAGAGGGCTGCAAAAAAAAA
GAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4269#0      ------------------------------------------------------------
consensus_4269#1      CCGCGAGTGTAAAAAGAGGACGCCTCTGGGAGGGCTACTCGATAAATGTACGCCTCTGGG 60
consensus_4269#2      ------------------------------------------------------------
                                                                                  

consensus_4269#0      ------------CCGGTTGACGAGAGCGGTCATAAA-GCACTAAGCATCCTAAACATCTG 47
consensus_4269#1      AGGGCTGCAAAAAAAAATGAAGAAATCAAATATATATGTAATAATGATACTAATAAAAAA 120
consensus_4269#2      -CCGCTCAGGATCAAAATGGCGTTTTCTTTTTTACAAAGAAGCGAAATATTCCATAGGCT 59
                                       **  *    *     ** *   *      **  *    *    

consensus_4269#0      AA----GTACG------AGACAGC-AGTAAAAATAAAGAGATAATAAAAAAAG------G 90
consensus_4269#1      AAAACGGTACGCCTCTGGGAGGGCTACTTGTAACATGAGGACGCCTCCGGGAG------G 174
consensus_4269#2      ATGACTTCAAATGTATGCGTGGATTGTTTCGAAAGTCAGTGTTCACGCTAGAGTACGGTG 119
                      *       *         *        *   **                  **      *

consensus_4269#0      GAAA-TGAAAAAAACGAATGTTGAAATTGGCGAAGACAGTTGCGGATATCACGAC-AATG 148
consensus_4269#1      GCTACTCGAAAATGTATGCCTCTGGGAGGGCTGCAAAAAATATATATAACACATTGAACG 234
consensus_4269#2      CTTAGCATGAAGCGTGATCTTCCAGATATGTTTT-ACGGTTCGGTACGA-ATGTGAAATT 177
                         *     **         *        *     *    *    *    *     **  

consensus_4269#0      GCGCA--AACCACGCTCCCAGATCG-------AAGCCCAATAAAG-GAAACAAGTTGCGG 198
consensus_4269#1      GACAA--AATTTTAATCTTATTTTTTTTTAGTAAGCCCAATAAAG-GAAACAAGTTGCGG 291
consensus_4269#2      TTTTATCAATTTTAGTCAAACTAATTCAAATTGTAGTTGGTAAATTGAGGCAGTTCTCTG 237
                          *  **      **  *                    ****  **  **  *  * *

consensus_4269#0      AAGGCGCTAAA-GTTGGAGAGAAAAAGAAATATGCTACTAG--TCGCTAAACTCCAGAAG 255
consensus_4269#1      AAGGCGCTAAA-GTTGGAGAGAAAAAGAAATATGCTACTAG--TCGCTAAACTCCAGAAG 348
consensus_4269#2      GAATTATAGAACGTTGATACACATATAAAATACGCCTCTGGGATGGCTATGTGTAAAGGA 297
                       *       ** ****      * *  ***** **  ** *  * ****      *    

consensus_4269#0      ATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATG 315
consensus_4269#1      ATGAAGTTTAAGAACAATCGACTGCAGAGAGCTATGCCGTTTGAGGAAAGCATTGACATG 408
consensus_4269#2      GAAAAATCCCCAGGAGGGCTACT-CAGAAAATGAACACCTCTG-GGAGGGCTGCAAAACA 355
                         ** *           * *** **** *   *   * * ** ***  **    * *  

consensus_4269#0      GAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATT 375
consensus_4269#1      GAACCACGACACTCGACCGCAATTGACATATCGAGCAATGACAGCTCCACACTAGCTATT 468
consensus_4269#2      AAAAAGAAGAATAAGACAAAAATATATATA-CTAATAATTAAAAAAAAGAATAAGGTACG 414
                       **       *   ***   ***  * *** * *  *** * *       *  ** **  

consensus_4269#0      TCAATGAACTCAATCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATA 435
consensus_4269#1      TCAATGAACTCACTCTCTGCGGTATCTATAAACATTCCGGAATGTAAACCGCTCGATATA 528
consensus_4269#2      CCTCTGGGAGGGCTACTTGT--CACACGAAGACGCCTAGGGAGGGCTACTCGAAAATGTA 472
                       *  **       *   **    *     * **     ** * *   **      ** **

consensus_4269#0      AAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGG--CATCCA 493
consensus_4269#1      AAGGACGAGATCGATCGCAAATCTTTTGAAAATTGGAAAGATTTATTAGAGG--CATCCA 586
consensus_4269#2      CGCCTCTGGGAGGGCTACAATAATAATAATAATAATGAACGCCTCTGAGAGGGCCGAGCG 532
                           *  *   *    ***   *  * * ***    **    * * *****  *   * 

consensus_4269#0      TGGAGCTCGCCGGCATCACAGACGAACACACTAAAAAC-AACGTCTTTAAGGTAAAGGCC 552
consensus_4269#1      TGGAGCTCGCCGGCATCACAGACGAAAACACTAAAAAC-AACGTCTTTAAGGTAAAGGCC 645
consensus_4269#2      TAAAAAGAGAACGCCTCTGGGAGGGCTACTCGATAAATGAACGCCTCTGAG---AGGGCT 589
                      *  *    *   ** **   ** *   ** * * ***  **** ** * **   * *** 

consensus_4269#0      GGACCATTACTACTGGAAACCTTGGGAGGAACACCAACCCTAGCATTCCCCGACGTAGCT 612
consensus_4269#1      GGACCATTACTACTGGAAACCTTGGGAGG------------------------------- 674
consensus_4269#2      G---CAAAAAAAAAGAAGA----------------------------------------- 605
                      *   **  *  *  * * *                                         

consensus_4269#0      ATTGCACCATACTCAAACGCAATGAAACGGTTGAAAGATCTGTTTGGATCCCGGGAATAT 672
consensus_4269#1      ------------------------------------------------------------
consensus_4269#2      ------------------------------------------------------------
                                                                                  

consensus_4269#0      CGTCTAGTACAGCGTCAAAA 692
consensus_4269#1      --------------------
consensus_4269#2      --------------------