These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATCCACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGTGTTGTGCGCT-GACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGGGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT] [+] EMBL BX469636 [GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATCCACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGTGTTGTGCGCT GACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGATAGATGTTGGGGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTTCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGGAGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTGTTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCAAGT] [+] EMBL BX628985 [ GTGGAAGGAGGACTGATCGATGTAGCTCACCACGAAACCTGGGCTCG GTTG GCGCTGGACGAAACGGCCGAAAT GGCGAAGGCTATTGATACGGCGCGCAAAATGACCAGCGAGCAAGATACGTTGATC GTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGA GGAAAATCATGCCATCCTAGCGGATCCTTCAAACTACGATTACAAGCAGACAGATATGCGGTACAT GGCAATGGTACCAATGGATGCGGAAACGCACGGTGGCGAT GATGTTGGGGTCTGGGCGT CGGGCCCAATGTCGCACCTGTTCC GGGGTGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATC GGTGACTATTACG AAGAGTCC GA CTCTg ] consensusID : consensus_4270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCCTGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTCCTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT] [+] EMBL BX468741 [GAATCGCACGAGGTTGATACGGCGCGCAAAATGACCAGCGAGCAGGATACGTTGATCGTCGTTAGCTCGGATCATTCCCACACGATGACGTACAATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGACCTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACCGAGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATATGCGCTACATGGCAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGATGATGTTGGGGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACACCATCCCGTACCTGATCTCGTACATCGCCCAGATCGGTGACTATTACGAAGAGTCCGACTCTGGCGCCGGCCAACCATTAGCCGTGTGCCTGTCACTACTTCTAGGCTGTTCCATTGCCGCGCTAATGAGGCGATATTAATCCTCCTGTCCTATTGGTAACAATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGTAACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCGATAAGGGGACACCGGCTTATCAGAAAGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4270#0 GAATCGGCACGAGGNNGTAAGTGCGATCGAGCTGCTGCAGCGACAACAAGAATTGGTATC 60 consensus_4270#1 ------------------------------------------------------------ consensus_4270#0 CACTTGCTGTTCGTGGAAGGAGGACTGATCGATGTTGCTCACCACGAAACCTGGGCTCGT 120 consensus_4270#1 ------------------------------------------------------------ consensus_4270#0 GTTGTGCGCTGACGAAACGGGCGAAATGGGCGAAGCGTATTGATACGGCGCGCAAAATGA 180 consensus_4270#1 ----------------------GAATCGCACGAGG----TTGATACGGCGCGCAAAATGA 34 *** * *** * ********************* consensus_4270#0 CCAGCGAGCAGGATACGTTGATCGGTCGTTAGCTCGGATCATTCCCACACGATGACGTAC 240 consensus_4270#1 CCAGCGAGCAGGATACGTTGATCG-TCGTTAGCTCGGATCATTCCCACACGATGACGTAC 93 ************************ *********************************** consensus_4270#0 AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC 300 consensus_4270#1 AATGGATATCCGAAACGTGGTAATGACATCCTCGGACTTGGTGACATCAGTGATGAGGAC 153 ************************************************************ consensus_4270#0 CTGCTCCCCTAAAACAACCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC 360 consensus_4270#1 CTGCTCCCCTACACCACCCTCAGCTACGCCAATGGGCTGTCGTACTACACGACCTACACC 213 *********** * ** ******************************************* consensus_4270#0 GAGGGAAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT 420 consensus_4270#1 GAGG-AAAATCATGCCATCCGAGCGGATCCTTCAAACTACGATTACAAGCAGACGGATAT 272 **** ******************************************************* consensus_4270#0 GCGCTACATGGGCAATGGTACCAATGGATGCGGAAACGCACGG-TGGCGATAGATGTTGG 479 consensus_4270#1 GCGCTACATGG-CAATGGTACCAATGGATGCGGAAACGCACGGGTGGCGAT-GATGTTGG 330 *********** ******************************* ******* ******** consensus_4270#0 GGTCTGGGCGTNCGGGCCCAATGTCGCACCTGTT--CCGGGGGCGTTTACGAACAGAACA 537 consensus_4270#1 GGTCTGGGCGTCGGGGCCCAATGTCGCACCTGTTTNCCGGGGGCGTTTACGAACAGAACA 390 *********** ********************* ************************ consensus_4270#0 CCATCCCGTACCTGATCTCGTACATCTGCCAGATCGGGTGACTATTACGAAAGAGTCCGG 597 consensus_4270#1 CCATCCCGTACCTGATCTCGTACATCGCCCAGATCGG-TGACTATTACGAA-GAGTCCGA 448 ************************** ********* ************* ******* consensus_4270#0 AGCTCTTGACGCCGGGGCAAACCAGTTAGCCGTGTGCCTGTCACGTACTTTCTAGGCGTG 657 consensus_4270#1 ---CTCTGGCGCCGG--CCAACCA-TTAGCCGTGTGCCTGTCAC-TACTT-CTAGGC-TG 499 ** ****** * ***** ******************* ***** ****** ** consensus_4270#0 TTCCCANTTGCCGGCGCTAATAAGGGGGATAATTTAATCCCTCCTGNACTATTGGTACCA 717 consensus_4270#1 TTCC--ATTGCCG-CGCTAATGAGGCG-ATA--TTAATCC-TCCTGTCCTATTGGTAACA 552 **** ****** ******* *** * *** ******* ***** ********* ** consensus_4270#0 AGT--------------------------------------------------------- 720 consensus_4270#1 ATGATCGGCCATCTGTCAACGAGGGGGAGTTACCATTTGATCGATGTAATACAACGACGT 612 * consensus_4270#0 ------------------------------------------------------------ consensus_4270#1 AACGTANCGCCCGCACAGAAGNCGTTCGACCATTGGGGGAATTCTTTTAGATTACGCCCG 672 consensus_4270#0 ------------------------------ consensus_4270#1 ATAAGGGGACACCGGCTTATCAGAAAGTGT 702 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||