These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTGTCTCGC-AGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGCAAAGTGAAATTGTGGCAAAGGGAAATAATACTT---AAAAAA-AGTGCCAGGCAGAAACAGTGCGAATGTGAATGTTGATGAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGC--------ACCTGTGATACTTGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAATTGGCATTGCATTACGTGTATGTGTGTG--TTTTTTTGTTGAGATTTTTGTCCATTTCTTAACAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCA-TTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGA] [+] EMBL BM612816 [CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTGTCTCGC AGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGCAAAGTGAAATTGTGGCAAAGGGAAATAATACTT AAAAAA AGTGCCAGGCAGAAACAGTGCGAATGTGAATGTTGATGAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGC ACCTGTGATACTTGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAATTGGCATTGCATTACGTGTATGTGTGTG TTTTTTTGTTGAGATTTTTGTCCATTTCTTAACAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCA TTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGA] [+] EMBL BX606041 [ TTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGTCGTTCGTTTCACGTGGCTGTCTCGCGAGGAGAGAGCGAAACCCACAACAAACGAACGTTACACGCCCGATCGTCGGGCAAAGTGAAATTGTGGCAAAGGGAAAGAATACTTTAAAAAAAACAGTGCCAGGCAGAAACAGTGCGAATGTGAATGTTGATAAAACGTAACTGTGCAAGGGAATAAATACTACTTCCAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGATTTAAAAAACAACTAAATGGCACATAATTACCTGTGATACTTGTGGCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTGGAATAAAGTGTGGTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTCAGTGCGGAATTATTGAAATTGGCATTGCATTACGTGTATGTGTGTGTTTTTTTTTGTTGAGATTTTTGTCCATTTCTTAACAAAGCCGAATCTACAAGCATGTTGCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGCGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCgactg ] consensusID : consensus_4272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [ATTCNCCCGAGGTTCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGAACCTGCAATGAAAAATGTTAACACAACGACATCTGGACCAGAAACNGACCTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTCAGGAAAGCCCCTGTCCGAATCCGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCAGCCTTCGTCGCCTTCGTCCAACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAAGCGAAAGATCAACTGCAAAACGCGAATCTACAAGTGCATCAAGCGCATCCTGAAACGCAACTCCATTCATGCCAGCCCGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACCCGAGAAGTCATCGAACTGCCGGCCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGACACTGCTAGAGAAACAACACCGTGATCTCGAGTACGATGTCAACCTGGCCAAGTGTGTCGAACAAGCCTGCCTTTAT] [+] EMBL AL931846 [ATTCNCCCGAGGTTCGCTTCGGAGCACTACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAGTGAAAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTCCGCAACGACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCTGAATGGAACCTGCAATGAAAAATGTTAACACAACGACATCTGGACCAGAAACNGACCTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTCAGGAAAGCCCCTGTCCGAATCCGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCAGCCTTCGTCGCCTTCGTCCAACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAAGCGAAAGATCAACTGCAAAACGCGAATCTACAAGTGCATCAAGCGCATCCTGAAACGCAACTCCATTCATGCCAGCCCGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACCCGAGAAGTCATCGAACTGCCGGCCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGACACTGCTAGAGAAACAACACCGTGATCTCGAGTACGATGTCAACCTGGCCAAGTGTGTCGAACAAGCCTGCCTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4272#0 CCGGTTGCTTGCGCGTCGGGATTTTAAGGACACGCGTTCGCCGTTCGTTTCACGTGGCTG 60 consensus_4272#1 -------------------------------ATTCNCCCGAGGTTCGCTTC--GGAGCAC 27 * * ** ***** *** * ** consensus_4272#0 TCTCGCAGGAGAGAGCGAAACCCACCACAAACGAACGTTACACGCCCGATCGTCGGGC-A 119 consensus_4272#1 TACGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGC--GACGAGCCGGAGAGTGA 85 * * * ** ** *** ** * ** * * * ** * * * consensus_4272#0 AAGTGAAATTGTGGCAAAGGGAAATAATACTTAAAAA---AAGTGCCAG---GCAGAAAC 173 consensus_4272#1 AAGCAGCAGCCCGGCCAAGGGAAAGCTCGTCGGAAAATCTGTACACCATTCCGCAACGAC 145 *** * *** ******** **** *** *** ** consensus_4272#0 AGTGCGAATGTGAATGTTGATGAAAC----GTAACTGTGCAAGGGAATAAATACTACTTC 229 consensus_4272#1 AACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAGCT 205 * * * * ** * * ** ** * * * * ** ** * * * * consensus_4272#0 CAACGGCTTTTCATCCTTGAAATTCGAGAAAGTGGAGTTTTAAAAAACAACTAAATGGCA 289 consensus_4272#1 GAATGGAACCTG--CAATGAAAAATGTTAACACAACGACATCTGGACCAG--AAACNGAC 261 ** ** * * ***** * ** * * * ** *** * consensus_4272#0 CCTGTGATACTTGTG-GCGTAAATGTGCACTCGTGTGTAAACAGAAATAAAGTG-GAATA 347 consensus_4272#1 CTCGTAGCAATTTCATGCTCATCTGTTGGCTGGCCTGTCAGGAAAGCCCCTGTCCGAATC 321 * ** * ** ** * *** ** * *** * * * ** **** consensus_4272#0 AAGTGTG-----GTGGCTGTGTGCGCGAGAAAATATAGTGTCCTTTGCGCGAGTCCTTTC 402 consensus_4272#1 CGTTCCGCCCAAATCGCCTTCTGCACACGTTACCGTCCAGCCTTCGTCGCC--TTCGTCC 379 * * * ** * *** * * * * * * * *** * * * * consensus_4272#0 AGTGCGGAATTATTGAAATTGGCATT-GC-ATTACGTGTATGTGTGTGTTTTTTTGTTGA 460 consensus_4272#1 AACTTTAAGCTGCTGAGTGGAAAGTTCGCGATCGACAGCAAGCGAAAGATCAACTGC-AA 438 * * * *** ** ** ** * * * * * * ** * consensus_4272#0 GATTTTTGTCCATTTCTTAACAAAGCCCAATCTACAAGCATGTTGCGCTTCGGAGCACTA 520 consensus_4272#1 AACGCGAATCTACAAGTGCATCAAGCGCATCCTG-AAACGCAACTCCATTCATGCCAGCC 497 * ** * * * **** ** ** ** * * *** ** consensus_4272#0 CGGTATAAGCGATTGAATAATGCCGGCGGTGCGTGTGGCGACGAGCCGGAGAG-TGAAAG 579 consensus_4272#1 CGCAGTCGTGCAAGGACCAGCAGCAGCAGCACCACC--CGAGAAGTCATCGAACTGCCGG 555 ** * * ** * * ** * * *** ** * ** ** * consensus_4272#0 CAGCAGCCCGGCCAAGGGAAA-----GCTCGTCGGAAAATCTGTACACCATTCCGCAACG 634 consensus_4272#1 CCGCACTCCGTTCGCCGAATGCTGCCGACTATCGCGAGATCAAGACACTGCT--AGAGAA 613 * *** *** * * * * *** * *** **** * * consensus_4272#0 ACAACACCGACGACAACGCCAACGAGACACCAGCAGCAGCAGCAGCGACTGCACAATCAG 694 consensus_4272#1 ACAACACCG-TGAT--CTCGAGTACGATGTCAACCTGGCCAAGTGTGTC-GAACAAGC-- 667 ********* ** * * * ** ** * ** * * * * **** * consensus_4272#0 CTGAATGGA- 703 consensus_4272#1 CTGCCTTTAT 677 *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||