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Anopheles gambiae
cluster # 4275 cluster # 4275       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4275#0 length = 684 sequences # 1  
consensus_4275#1 length = 678 sequences # 1  
consensus_4275#2 length = 511 sequences # 1  

consensusID : consensus_4275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAA]

[+] EMBL BM623949             [CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAA]


>consensus_4275#0 CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCT TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCG CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT ACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAA GCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATC CATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACAT TGTCTAAGAAACGACACATCGAAA



consensusID : consensus_4275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence
                              [CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAAATA]

[+] EMBL BM615800             [CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAAATA]


>consensus_4275#1 CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTA GTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTAC ACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGAT CTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTT GGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGA ACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGA ACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAG ATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAAC AAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTG GAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATC TGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACATTGTCTAAGA AACGACACATCGAAAATA



consensusID : consensus_4275#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence
                              [AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCACACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCGCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAGCCCTCGTCCTG]

[+] EMBL AL934975             [AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCACACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCGCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAGCCCTCGTCCTG]


>consensus_4275#2 AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTT GTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCACACCTCTACACAGCCTA AACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATG GCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCC GACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAA AAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATC GATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGC GCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAA GAAGCTTGCGGTCAAATCAGCCCTCGTCCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4275#0      CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCT 60
consensus_4275#1      ---------CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCT 51
consensus_4275#2      -----------------AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCT 43
                                                    ******************************

consensus_4275#0      TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCG 120
consensus_4275#1      TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCG 111
consensus_4275#2      TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCA 103
                      *********************************************************** 

consensus_4275#0      CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC 180
consensus_4275#1      CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC 171
consensus_4275#2      CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC 163
                      ************************************************************

consensus_4275#0      CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT 240
consensus_4275#1      CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT 231
consensus_4275#2      CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT 223
                      ************************************************************

consensus_4275#0      GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC 300
consensus_4275#1      GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC 291
consensus_4275#2      GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC 283
                      ************************************************************

consensus_4275#0      ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC 360
consensus_4275#1      ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC 351
consensus_4275#2      ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC 343
                      ************************************************************

consensus_4275#0      AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT 420
consensus_4275#1      AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT 411
consensus_4275#2      AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT 403
                      ************************************************************

consensus_4275#0      ACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA 480
consensus_4275#1      ACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA 471
consensus_4275#2      ACATGCAAGATATTAGCGCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA 463
                      ***************** ******************************************

consensus_4275#0      AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAA 540
consensus_4275#1      AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAA 531
consensus_4275#2      AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAGCCCTCGTCCTG------------ 511
                      ************************************ ***********            

consensus_4275#0      GCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATC 600
consensus_4275#1      GCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATC 591
consensus_4275#2      ------------------------------------------------------------
                                                                                  

consensus_4275#0      CATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACAT 660
consensus_4275#1      CATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACAT 651
consensus_4275#2      ------------------------------------------------------------
                                                                                  

consensus_4275#0      TGTCTAAGAAACGACACATCGAAA--- 684
consensus_4275#1      TGTCTAAGAAACGACACATCGAAAATA 678
consensus_4275#2      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)