These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAA] [+] EMBL BM623949 [CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAA] consensusID : consensus_4275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAAATA] [+] EMBL BM615800 [CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCGCACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAAGCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATCCATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACATTGTCTAAGAAACGACACATCGAAAATA] consensusID : consensus_4275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCACACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCGCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAGCCCTCGTCCTG] [+] EMBL AL934975 [AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCTTAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCACACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCCCGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTTGCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGACATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGCAGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTTACATGCAAGATATTAGCGCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGAAACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAGCCCTCGTCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4275#0 CCGTACGAGGTGTAAAAATATTATGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCT 60 consensus_4275#1 ---------CGACCCACGCGTCCGGTTTACCTAAATTGATTGATAGCTTTGGAAGTCGCT 51 consensus_4275#2 -----------------AGAATCGCCGAGGCTAAATTGATTGATAGCTTTGGAAGTCGCT 43 ****************************** consensus_4275#0 TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCG 120 consensus_4275#1 TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCG 111 consensus_4275#2 TAAGATTTAGTTTGCTTGTTTGTTGTCATAGTTGATGCCACTTATGTAAATACAGAGTCA 103 *********************************************************** consensus_4275#0 CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC 180 consensus_4275#1 CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC 171 consensus_4275#2 CACCTCTACACAGCCTAAACAATACACGCAATTTTACATCTATAACCTCTTCAGAAAGCC 163 ************************************************************ consensus_4275#0 CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT 240 consensus_4275#1 CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT 231 consensus_4275#2 CGAACAGATCTAAAATGGCTGACTACTGGAAGTCGAATGATCGCAAGTACTGCGACTTTT 223 ************************************************************ consensus_4275#0 GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC 300 consensus_4275#1 GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC 291 consensus_4275#2 GCAAGTGTTGGATAGCCGACAATAAATCCAGTGTTCAGTTCCACGAGAATGGAAAACGAC 283 ************************************************************ consensus_4275#0 ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC 360 consensus_4275#1 ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC 351 consensus_4275#2 ATCAGATGAACGTACAAAAGCGTATTTCAGAGATAAGTCGAAATAGCTACAAAGCTCAGC 343 ************************************************************ consensus_4275#0 AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT 420 consensus_4275#1 AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT 411 consensus_4275#2 AGGAGCAGAACAAAATCGATGCAGATTTGAAGAAAATGAATGATGCCGCCATGAAGGCTT 403 ************************************************************ consensus_4275#0 ACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA 480 consensus_4275#1 ACATGCAAGATATTAGCTCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA 471 consensus_4275#2 ACATGCAAGATATTAGCGCTGGAGCTGATATAAGTTCGCGGGAGTTAAACGAAAAGCAGA 463 ***************** ****************************************** consensus_4275#0 AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAA 540 consensus_4275#1 AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAACCCTCGTCCTGGACCGTCTGCAA 531 consensus_4275#2 AACTCGAACAAGTGCAAGAAGCTTGCGGTCAAATCAGCCCTCGTCCTG------------ 511 ************************************ *********** consensus_4275#0 GCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATC 600 consensus_4275#1 GCAGCTCTGGAAACGCTGACAGCAGACCTGCGAAAGCGAAAAAAGCACGGGAAGCGGATC 591 consensus_4275#2 ------------------------------------------------------------ consensus_4275#0 CATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGACAAGGGAAAGACAT 660 consensus_4275#1 CATTGTATCTGCCAGGCGCAGAGAGCGAAGAAGATACAGAAAATGGCAAGGGAAAGACAT 651 consensus_4275#2 ------------------------------------------------------------ consensus_4275#0 TGTCTAAGAAACGACACATCGAAA--- 684 consensus_4275#1 TGTCTAAGAAACGACACATCGAAAATA 678 consensus_4275#2 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||