These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CCGCCCACGCGTCCGAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCGGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTCCCCCGCAAACACACAGATACCGTACATCGAGATCGAGT] [+] EMBL BM582731 [CCGCCCACGCGTCCGAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCGGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTCCCCCGCAAACACACAGATACCGTACATCGAGATCGAGT] consensusID : consensus_4289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGATTCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTCTAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAAATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGGGAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGATCGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGAACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCTTAGCAACTTGTAAACACCCACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAAACTTNNACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGTCAACACTTACCAACCTNACACACCNTCTCTCCACTNTAC] [+] EMBL AL930177 [TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGATTCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTCTAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAAATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGGGAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGATCGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGAACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCTTAGCAACTTGTAAACACCCACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAAACTTNNACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGTCAACACTTACCAACCTNACACACCNTCTCTCCACTNTAC] consensusID : consensus_4289#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCGGTTCCTTCACAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCAAGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAA] [+] EMBL BM582696 [CCGGTTCCTTCACAGGGAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATCGAGTGGAAAGATCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAAAGTGTTGGTAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGGTTTAGATTTAGATTCTGATTTCCAGTGCGAGCAAGAGGACAGTAAACATGGAGTGAACCGAAAATAATCTCTAAATATTCCTACTTCGAAATCAACTAATAGTTTGTGCTTGGTAAGACACAATAAAAGAAGCTTAATTTATTATCACATTACACGGGAAAGCAGCGAACGTGGAGTGAATACATGGAATTTTCTAACAAAGAATCAAAGGATCGTGGTTAGTACAGTGGTAAGATTGTTGCTTTCATACGTGAAAGTGTTGTAAGTAAATAATGAACAAATATTGTACTTTTTTATATAGCAGCTCTACACATTTATTATAATTATTTGTATGTACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAATACCAAAGTTCAACATATTCAAACGATCCACTATCAACCGTAACCGTTTGCCATCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4289#0 -CCGCCCACGCGT---CCG-AGGG-AAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC 54 consensus_4289#2 ----CCGGTTCCT---TCACAGGG-AAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC 52 consensus_4289#1 TCGCCCGAGGTGTACTTCACAGTGCAAGGTTCACAGGATCTTCTCTTATAGAGTGTGATC 60 ** * * ** * *********************************** consensus_4289#0 GAGTGGAAAGATC-GTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAA-AGTGTTGG 112 consensus_4289#2 GAGTGGAAAGATC-GTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAA-AGTGTTGG 110 consensus_4289#1 GAGTGGAAAGATCCGTTCAAATAGTCGATTCAAGCGAACTTAAGTGTGGAACAGTGTTGG 120 ************* ************************************* ******** consensus_4289#0 TAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGG---TTTAGATTTA----GAT 165 consensus_4289#2 TAAAATGAATGCATATTTATCGAATATATGTGTGCAGTGG---TTTAGATTTA----GAT 163 consensus_4289#1 TAAAATGAATGCATATTTATCGAATATATGTGTGCAGCTGGTATCTAANANTATTACGAT 180 ************************************* * * ** ** *** consensus_4289#0 TCTGATTTCCAGTGCGAGCG-GAGGACAG-TAAACATGGAGTGAACCGAAAA-TAATCTC 222 consensus_4289#2 TCTGATTTCCAGTGCGAGCAAGAGGACAG-TAAACATGGAGTGAACCGAAAA-TAATCTC 221 consensus_4289#1 TCTGATTTCCAGTGCGAGCAAGAGGACAGCTAAACATGGAGTGAACCGAAAACTAATCTC 240 ******************* ******** ********************** ******* consensus_4289#0 TAAATATTCCTACT-TCGAAA-TCAACTAA-TAGTTTGTG-----CTTGGTAAGACACAA 274 consensus_4289#2 TAAATATTCCTACT-TCGAAA-TCAACTAA-TAGTTTGTG-----CTTGGTAAGACACAA 273 consensus_4289#1 TAAATATTCCTACTATCGAAACTCAACTAAATAGCTTATGGTGCTCTGGNTAAGACACAA 300 ************** ****** ******** *** ** ** ** * ********** consensus_4289#0 -TAAAAGAAGCTTAATTTAT---TATCACA--TTACACGGGAAAG--CAGCGAACGT--- 323 consensus_4289#2 -TAAAAGAAGCTTAATTTAT---TATCACA--TTACACGGGAAAG--CAGCGAACGT--- 322 consensus_4289#1 ATAAAAGAAGCTTAACTCCTACTTATCACTACTTACACGGGCAAAGCCAGCGAACGGTGG 360 ************** * * ****** ********* ** ********* consensus_4289#0 GGAGTGAA---TACATGGAAT----TTTCTAACAAAGAATCAAAG-----GATCGTGGTT 371 consensus_4289#2 GGAGTGAA---TACATGGAAT----TTTCTAACAAAGAATCAAAG-----GATCGTGGTT 370 consensus_4289#1 GAGNTGNAACTTACATGGGACACTATCTCTCCTAAACACACAGAAATCCANAACGTGGAT 420 * ** * ******* * * *** *** * ** * * ***** * consensus_4289#0 AGTACAGTGGTAAG--ATTGTTGCTTTC-ATACGTGAAAGTG-TTGTAAGTAAATAATGA 427 consensus_4289#2 AGTACAGTGGTAAG--ATTGTTGCTTTC-ATACGTGAAAGTG-TTGTAAGTAAATAATGA 426 consensus_4289#1 CGCTGGGTCTCAGCCTACAGTGGGTAACGATATATGGTCTTGGCTATACATTACGGTTGA 480 * ** * * ** * * * *** ** ** * ** * * *** consensus_4289#0 ACAAATATTGTACTTTTTTATA-TAGCAGCTCTACACATTTATTATAATTATTTGTATGT 486 consensus_4289#2 ACAAATATTGTACTTTTTTATA-TAGCAGCTCTACACATTTATTATAATTATTTGTATGT 485 consensus_4289#1 ACAAGGTTTGGNTCTTTGAGTAACAACGGCGTTTATCACACGCT-TAGCAACTTGTAAAC 539 **** *** *** ** * * ** * ** * ** * ***** consensus_4289#0 ACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAAT 546 consensus_4289#2 ACTCCAACTTTTAGCTATATTTTTTCACAGCTAGTTCACCAAATTGCCAAATTGCCAAAT 545 consensus_4289#1 ACCC-----ACCAACCACTTTAAANTATATGGAGTTCACCNTCTTCTCNCCTCCTCGTAA 594 ** * * * * ** * * ******** ** * * * * consensus_4289#0 ACCAAAGTTCAACATATTCAAACGATCCACT-----ATCAACCGTAACCGTTTGCCATCG 601 consensus_4289#2 ACCAAAGTTCAACATATTCAAACGATCCACT-----ATCAACCGTAACCGTTTGCCATCG 600 consensus_4289#1 ACTTNNACCTTACGGCNCCCACTGGCCCTTCCCCTCATAANCCAAGCCCAAATTCCACGT 654 ** ** * * * ** ** * ** ** * *** consensus_4289#0 AAAAAGCTGTCATGCCCATGCTCATTCACATGTATTTACACTTGTGTTCGTTCATTTTCC 661 consensus_4289#2 AA---------------------------------------------------------- 602 consensus_4289#1 CAACACTTACCAACCTNACACACCNTCTCTCCACTNTAC--------------------- 693 * consensus_4289#0 CCCGCAAACACACAGATACCGTACATCGAGATCGAGT 698 consensus_4289#2 ------------------------------------- consensus_4289#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||