These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAACCAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAGGATTGCACTGAAAATG] [+] EMBL BM590073 [CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAACCAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAGGATTGCACTGAAAATG] consensusID : consensus_4293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC] [+] EMBL BM622084 [CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC] consensusID : consensus_4293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTCATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACAGTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAGGAGCGGGGAGCG] [+] EMBL BX624057 [GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTCATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACAGTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAGGAGCGGGGAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4293#0 ------------------------------------------------------------ consensus_4293#1 ------------------------------------------------------------ consensus_4293#2 GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTC 60 consensus_4293#0 -----CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACA 55 consensus_4293#1 -------------CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGG--A 45 consensus_4293#2 ATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACA 120 * * * * * * consensus_4293#0 ACAACCAAAAAG-GATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 114 consensus_4293#1 ACAGGCGGGCAA-GATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 104 consensus_4293#2 GTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 180 * *********************************************** consensus_4293#0 TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA 174 consensus_4293#1 TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAA 164 consensus_4293#2 TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA 240 ********************************************************* ** consensus_4293#0 TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA 234 consensus_4293#1 CGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGA 224 consensus_4293#2 TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA 300 ************** ***** *************** * ******************** consensus_4293#0 GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 294 consensus_4293#1 GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 284 consensus_4293#2 GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 360 ************************************************************ consensus_4293#0 CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 354 consensus_4293#1 CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 344 consensus_4293#2 CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 420 ************************************************************ consensus_4293#0 ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 414 consensus_4293#1 ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 404 consensus_4293#2 ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 480 ************************************************************ consensus_4293#0 TGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAA 474 consensus_4293#1 TGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAA 464 consensus_4293#2 TGGCAGCTTCA-GGAGCGGGGAGCG----------------------------------- 504 *********** ****** ****** consensus_4293#0 AAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGG 534 consensus_4293#1 AAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGG 524 consensus_4293#2 ------------------------------------------------------------ consensus_4293#0 CTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAAT 594 consensus_4293#1 CTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAAT 584 consensus_4293#2 ------------------------------------------------------------ consensus_4293#0 CCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGC 654 consensus_4293#1 CCAGAAATGCC------------------------------------------------- 595 consensus_4293#2 ------------------------------------------------------------ consensus_4293#0 TAAAAGGATTGCACTGAAAATG 676 consensus_4293#1 ---------------------- consensus_4293#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||