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Anopheles gambiae
cluster # 4293 cluster # 4293       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4293#0 length = 676 sequences # 1  
consensus_4293#1 length = 595 sequences # 1  
consensus_4293#2 length = 504 sequences # 1  

consensusID : consensus_4293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence
                              [CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAACCAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAGGATTGCACTGAAAATG]

[+] EMBL BM590073             [CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAACCAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAGGATTGCACTGAAAATG]


>consensus_4293#0 CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACAACAAC CAAAAAGGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGC GAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCA CGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGA AATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAAC GTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTT CTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAG CTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAAC GGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAA GCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAA ATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGCTAAAAG GATTGCACTGAAAATG



consensusID : consensus_4293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC]

[+] EMBL BM622084             [CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC]


>consensus_4293#1 CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGGAACAGGCGGGCAAGAT TAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACA GCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAACGGGCACGAGGCCGGC GTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGAT CCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCG TTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTG ATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAAGGAG CGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAAAAAAACGGGCGTCATC TCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGGCTGGAAGCTCGGCATC CCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAATCCAGAAATGCC



consensusID : consensus_4293#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTCATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACAGTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAGGAGCGGGGAGCG]

[+] EMBL BX624057             [GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTCATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACAGTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGCTTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAATGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGAGCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGACGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATCACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTACTGGCAGCTTCAGGAGCGGGGAGCG]


>consensus_4293#2 GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTC ATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACA GTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC TGGCAGCTTCAGGAGCGGGGAGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4293#0      ------------------------------------------------------------
consensus_4293#1      ------------------------------------------------------------
consensus_4293#2      GCCGTGCACTTGCTGGGCAAACGTTTACGTCTCGATTATTTTTTTATGACACCAACCGTC 60
                                                                                  

consensus_4293#0      -----CCGCCTTGCTGGAAGAGGGTGGTGTGTGCCAATTTCGTCGTCGAGAAGACCGACA 55
consensus_4293#1      -------------CCGTGGGAATGTGCTAGTGGGCAGCGGTAGTGTCGATAGCGCGG--A 45
consensus_4293#2      ATCGCTGGTCCCGTTTTTCCCACGAGCCACCACCATTAAGGGATGCTGGTTGCGCAAACA 120
                                             * *                  *  *      *    *

consensus_4293#0      ACAACCAAAAAG-GATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 114
consensus_4293#1      ACAGGCGGGCAA-GATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 104
consensus_4293#2      GTCGTCGTTCTTCGATTAATCTCCCACGATGCAAGTGTCATCCGTAACGACGCAAATGGC 180
                           *       ***********************************************

consensus_4293#0      TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA 174
consensus_4293#1      TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAGAA 164
consensus_4293#2      TTCCGCGAAGCTGACAGCTCGCCCGTCGGCGGCAGAGCGGCCGACAGCAGCAGGCCAAAA 240
                      ********************************************************* **

consensus_4293#0      TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA 234
consensus_4293#1      CGGGCACGAGGCCGGCGTGAACGGTGCACCCGCCGGCACGCCAACAGCCGCAACGACCGA 224
consensus_4293#2      TGGGCACGAGGCCGGAGTGAATGGTGCACCCGCCGGCGCCCCAACAGCCGCAACGACCGA 300
                       ************** ***** *************** * ********************

consensus_4293#0      GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 294
consensus_4293#1      GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 284
consensus_4293#2      GCCGGAAATCGTCGATCCGTTTTGCAATGCGGACAATCCGCAGATAATCACCTTCCAGGA 360
                      ************************************************************

consensus_4293#0      CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 354
consensus_4293#1      CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 344
consensus_4293#2      CGTAACGTCCGCGGCGTTCAAAATCAGAAAAGGTGTCGAGCTGACGCCGTGCGTGAAATC 420
                      ************************************************************

consensus_4293#0      ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 414
consensus_4293#1      ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 404
consensus_4293#2      ACACTTCTCCGACCTGATCGACATGGACATCTACCTGAAGAAGGAATTTCTGCAGTTTAC 480
                      ************************************************************

consensus_4293#0      TGGCAGCTTCAAGGAGCGGGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAA 474
consensus_4293#1      TGGCAGCTTCAAGGAGCGTGGAGCGCGCTACGCGTTGCTAATGCTGTCGGACGAGCAGAA 464
consensus_4293#2      TGGCAGCTTCA-GGAGCGGGGAGCG----------------------------------- 504
                      *********** ****** ******                                   

consensus_4293#0      AAAAACGGGCGTCATCTCGGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGG 534
consensus_4293#1      AAAAACGGGCGTCATCTCAGCCTCCCTCGGGAATCATGCGCAGGGTCTGTCCTATCACGG 524
consensus_4293#2      ------------------------------------------------------------
                                                                                  

consensus_4293#0      CTGGAAGCTGGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAAT 594
consensus_4293#1      CTGGAAGCTCGGCATCCCGGTGACGGTCGTGATGCCGCTGAAGGCTTCGCTGATGAAAAT 584
consensus_4293#2      ------------------------------------------------------------
                                                                                  

consensus_4293#0      CCAGAAATGCCGTAACTATCACGCTAATGTCGTCGTACAGGGAGCGGACATGGGCGAGGC 654
consensus_4293#1      CCAGAAATGCC------------------------------------------------- 595
consensus_4293#2      ------------------------------------------------------------
                                                                                  

consensus_4293#0      TAAAAGGATTGCACTGAAAATG 676
consensus_4293#1      ----------------------
consensus_4293#2      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)