cluster # 4301

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4301 cluster # 4301 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4301#0 length = 665 sequences # 2

consensus_4301#1 length = 621 sequences # 1

consensusID : consensus_4301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [CCGAGAATTCTACGCAAGGAGCGACGGTGCAGATAGCTGAATTTCGTCGAAAGTCTCGAAGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGAGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCGCATCCGGAACCGTTGGCTGATCGGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCGAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTCGTCTGCCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTGTGGATGGAGTACAGCAGTGGTTCGCAGTACTTAAATCATCTCTATCTGTATCTCAATCAACAGCACATTAAAAAGCAAAAGCTGAACGAAGCGGAAGCTGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAAAGATGGAGATTGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGGGCAACGAGCTGGTCGACCAGATACTGAGCGGTATCAACGCCGGAACGGGTGAACAATTCCAGCGGA]

[+] EMBL BM641229             [CCGAGAATTCTACGCAAGGAGCGACGGTGCAGATAGCTGAATTTCGTCGAAAGTCTCGAAGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGAGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCGCATCCGGAACCGTTGGCTGATCGGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCGAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTCGTCTGCCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTGTGGATGGAGTACAGCAGTGGTTCGCAGTACTTAAATCATCTCTATCTGTATCTCAATCAACAGCACATTAAAAAGCAAAAGCTGAACGAAGCGGAAGCTGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAAAGATGGAGATTGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGGGCAACGAGCTGGTCGACCAGATACTGAGCGGTATCAACGCCGGAACGGGTGAACAATTCCAGCGGA]
[+] EMBL BM626491             [                          ccGCAGATAGCTGAATTTCGTCGAAAGTCTCGAAGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGAGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCGCATCCGGAACCGTTGGCTGATCGGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCGAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTCGTCTGCCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTGTGGATGGAGTACAGCAGTGGTTCGCAGTACTTAAATCATCTCTATCTGTATCTCAATCAACAGCACATTAAAAAGCAAA                                                                                                                                                                                       ]




>consensus_4301#0
CCGAGAATTCTACGCAAGGAGCGACGGTGCAGATAGCTGAATTTCGTCGAAAGTCTCGAA
GAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGA
GCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAA
CAATCGATTTGTCGATGTGTACGAGATATGTGTGGCGCATCCGGAACCGTTGGCTGATCG
GTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCG
AGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTC
GTCTGCCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTGTGGATGGAGTACAGCAG
TGGTTCGCAGTACTTAAATCATCTCTATCTGTATCTCAATCAACAGCACATTAAAAAGCA
AAAGCTGAACGAAGCGGAAGCTGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAAA
GATGGAGATTGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGGG
CAACGAGCTGGTCGACCAGATACTGAGCGGTATCAACGCCGGAACGGGTGAACAATTCCA
GCGGA

consensusID : consensus_4301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCTGAATTTCGTCGAAAGTCTCGAAGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGAGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCCCATCCGGAACCGTTGGCTGATCGGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCGAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTCGTCTGTCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTATGGATGGAGTACAGCAGTGGTTCGCAGTACTTAAATCATCTCTACCTGTATCTCAATCAACAGCACATTAAAAAGCAAAAGCTGAACGAAGCGGAAGCCGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAAAGATGGAGATCGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGGGCAACGAGCTGGTCGACCAGAATACTGAGCG]

[+] EMBL BM593242             [CCGCCCACGCGTCCGCCCACGCGTCCGCTGAATTTCGTCGAAAGTCTCGAAGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGAGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCCCATCCGGAACCGTTGGCTGATCGGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCGAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTCGTCTGTCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTATGGATGGAGTACAGCAGTGGTTCGCAGTACTTAAATCATCTCTACCTGTATCTCAATCAACAGCACATTAAAAAGCAAAAGCTGAACGAAGCGGAAGCCGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAAAGATGGAGATCGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGGGCAACGAGCTGGTCGACCAGAATACTGAGCG]




>consensus_4301#1
CCGCCCACGCGTCCGCCCACGCGTCCGCTGAATTTCGTCGAAAGTCTCGAAGAACTCTAC
AGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGGAGCTGCGCGA
AACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGAACAATCGATT
TGTCGATGTGTACGAGATATGTGTGGCCCATCCGGAACCGTTGGCTGATCGGTTGTATTT
GGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGCGAGTGCTGAT
CGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGTCGTCTGTCTC
GCCATATCTGCTGCTGGAACGGTACTACGACGTATGGATGGAGTACAGCAGTGGTTCGCA
GTACTTAAATCATCTCTACCTGTATCTCAATCAACAGCACATTAAAAAGCAAAAGCTGAA
CGAAGCGGAAGCCGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAAAGATGGAGAT
CGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGGGCAACGAGCT
GGTCGACCAGAATACTGAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4301#0      CCGAGAATTCTACGCAAG-GAGCGACGGTGCAGATAGCTGAATTTCGTCGAAAGTCTCGA 59
consensus_4301#1      ---------CCGCCCACGCGTCCGCCCACGC-GTCCGCTGAATTTCGTCGAAAGTCTCGA 50
                               *  * ** * *  ** *   ** *   ************************

consensus_4301#0      AGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGG 119
consensus_4301#1      AGAACTCTACAGAGATGTCGCTCAAGCCGCGCAGAATAGCGTTCGACGAGGTCTGGAAGG 110
                      ************************************************************

consensus_4301#0      AGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGA 179
consensus_4301#1      AGCTGCGCGAAACGGTACAGCAGGTGATCACCCTGCAAGACATCAAGCGCGACGTTTGGA 170
                      ************************************************************

consensus_4301#0      ACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCGCATCCGGAACCGTTGGCTGATC 239
consensus_4301#1      ACAATCGATTTGTCGATGTGTACGAGATATGTGTGGCCCATCCGGAACCGTTGGCTGATC 230
                      ************************************* **********************

consensus_4301#0      GGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGC 299
consensus_4301#1      GGTTGTATTTGGAGACGAAAACGTTCCTAGAGAATCACGTGCAAACGTTGCTGGAGGAGC 290
                      ************************************************************

consensus_4301#0      GAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGT 359
consensus_4301#1      GAGTGCTGATCGGGGACAGTCAAAATGCTTCCAACGAGCAATCGGCCGGCACTGGGTCGT 350
                      ************************************************************

consensus_4301#0      CGTCTGCCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTGTGGATGGAGTACAGCA 419
consensus_4301#1      CGTCTGTCTCGCCATATCTGCTGCTGGAACGGTACTACGACGTATGGATGGAGTACAGCA 410
                      ****** ************************************ ****************

consensus_4301#0      GTGGTTCGCAGTACTTAAATCATCTCTATCTGTATCTCAATCAACAGCACATTAAAAAGC 479
consensus_4301#1      GTGGTTCGCAGTACTTAAATCATCTCTACCTGTATCTCAATCAACAGCACATTAAAAAGC 470
                      **************************** *******************************

consensus_4301#0      AAAAGCTGAACGAAGCGGAAGCTGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAA 539
consensus_4301#1      AAAAGCTGAACGAAGCGGAAGCCGTGTACGGTTGCAGCAACCATGGTGATAATCAGGAAA 530
                      ********************** *************************************

consensus_4301#0      AGATGGAGATTGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGG 599
consensus_4301#1      AGATGGAGATCGGTGAGCTGACGCTCGAGATCTGGAACCAGTACATGATACAGCGGCTGG 590
                      ********** *************************************************

consensus_4301#0      GCAACGAGCTGGTCGACCAGA-TACTGAGCGGTATCAACGCCGGAACGGGTGAACAATTC 658
consensus_4301#1      GCAACGAGCTGGTCGACCAGAATACTGAGCG----------------------------- 621
                      ********************* *********                             

consensus_4301#0      CAGCGGA 665
consensus_4301#1      -------