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Anopheles gambiae
cluster # 4306 cluster # 4306       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4306#0 length = 1351 sequences # 2  
consensus_4306#1 length = 654 sequences # 1  

consensusID : consensus_4306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1351
fasta sequence
                              [ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTTTAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTCCGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCGACCGCGGACGATCTCGGCCAGCTGTACCCGTGGCGCGAGGATGAGATTGTGATCGCCGACAGCGAACCGATCCTGATCGCACTGTACCACGTCCCGAGCCGCCAGGTGCTGTCGTATTATCAACGGCGCGAGAGTGATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGAGCTGGTCGTGTGCTACTCCTTCACGGATCTCAGCAAACCACCCGAAATACTTGTTCTCGCGTCGATGGATCGCGTGGTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCTCCTGTGGAGTCCGGATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACGATTTGGAACTTCTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTAGCGGTAG-TCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCAGTTCCTGGGACGCTTCTCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTCTGGCCTCGAGTTTTCTTTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAGCCCGTAGAGTCTTACAGGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTCATCGAATGCGAGTAGGTAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAATGAAGACAAGCTTTTTCCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATTCGGACTGAGTTTGTTTACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAGAATGCAAACGTTGTATAGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTATTTTATATTTAAAGTTCATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTTACCGAGGCCTTCGTGCTTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATTTGATTTTTCTGGCGCAACTACCACAAGCCTATTAAAACATTGTTAGC]

[+] EMBL CNS090YJ             [ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTTTAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTCCGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCGACCGCGGACGATCTCGGCCAGCTGTACCCGTGGCGCGAGGATGAGATTGTGATCGCCGACAGCGAACCGATCCTGATCGCACTGTACCACGTCCCGAGCCGCCAGGTGCTGTCGTATTATCAACGGCGCGAGAGTGATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGAGCTGGTCGTGTGCTACTCCTTCACGGATCTCAGCAAACCACCCGAAATACTTGTTCTCGCGTCGATGGATCGCGTGGTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCTCCTGTGGAGTCCGGATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACGATTTGGAACTTCTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTAGCGGTAG TCACGGACCGATGGAAGAGCGTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS090YK             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATGATGAAACGCTCACGATTTGGAACTTTTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTAGCGGTGGCTCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCAGTTCCTGGGACGCTTCTCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTCTGGCCTCGAGTTTTCTTTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAGCCCGTAGAGTCTTACAGGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTCATCGAATGCGAGTAGGTAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAATGAAGACAAGCTTTTTCCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATTCGGACTGAGTTTGTTTACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAGAATGCAAACGTTGTATAGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTATTTTATATTTAAAGTTCATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTTACCGAGGCCTTCGTGCTTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATTTGATTTTTCTGGCGCAACTACCACAAGCCTATTAAAACATTGTTAGC]


>consensus_4306#0 ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTT TAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTC CGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGC TGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATC GATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCGACCGCGGACG ATCTCGGCCAGCTGTACCCGTGGCGCGAGGATGAGATTGTGATCGCCGACAGCGAACCGA TCCTGATCGCACTGTACCACGTCCCGAGCCGCCAGGTGCTGTCGTATTATCAACGGCGCG AGAGTGATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGAGCTGGTCGTGT GCTACTCCTTCACGGATCTCAGCAAACCACCCGAAATACTTGTTCTCGCGTCGATGGATC GCGTGGTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCTCCTGTGGAGTCCGG ATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACGATTTGGAACTTCTTCG GTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGCGAACCGCCGGTCAGTA GCGGTAGTCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCAGTTCCTGGGACGCTTC TCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTCTGGCCTCGAGTTTTCT TTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAGCCCGTAGAGTCTTACA GGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTCATCGAATGCGAGTAGG TAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAATGAAGACAAGCTTTTT CCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATTCGGACTGAGTTTGTTT ACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAGAATGCAAACGTTGTAT AGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTATTTTATATTTAAAGTTC ATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTTACCGAGGCCTTCGTGC TTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATTTGATTTTTCTGGCGCA ACTACCACAAGCCTATTAAAACATTGTTAGC



consensusID : consensus_4306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGCCGGAACAGAAAACGGATCCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACTATTCGAGCGTGCTGAAAAGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCTTCCGCGATAGCACCAGCCGGCAGGTTTGCAAACGGCTCGCCAACAAGCGCCCGCTGGAGTGCATCGTCCGCCCCACGTACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCGCACCAAACCGATTGGGTTCATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTACTATCACAAAATCATCGACTGGTCCGCGGCCGGGCAGATTGCGGCAATCTTCAGCAAAAAGCTCGTCATCTGGACACCCAACACGGACGAGATCATTGGGCTGGGGGCCCAGTACGCGACGTCGATCGCGTTCGAGCCGGCGGGCACCCGGCTGGGCATGGGCATTTTTATGATGAACCGACCGTGGCTGAACATC]

[+] EMBL BX627575             [GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGATACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGCCGGAACAGAAAACGGATCCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACTATTCGAGCGTGCTGAAAAGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCTTCCGCGATAGCACCAGCCGGCAGGTTTGCAAACGGCTCGCCAACAAGCGCCCGCTGGAGTGCATCGTCCGCCCCACGTACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCGCACCAAACCGATTGGGTTCATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTACTATCACAAAATCATCGACTGGTCCGCGGCCGGGCAGATTGCGGCAATCTTCAGCAAAAAGCTCGTCATCTGGACACCCAACACGGACGAGATCATTGGGCTGGGGGCCCAGTACGCGACGTCGATCGCGTTCGAGCCGGCGGGCACCCGGCTGGGCATGGGCATTTTTATGATGAACCGACCGTGGCTGAACATC]


>consensus_4306#1 GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGCTGAACGAGATCGAAAAG CTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATCGATTTATTCCCCGTCGA TACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGCCGGAACAGAAAACGGAT CCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACTATTCGAGCGTGCTGAAA AGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCTTCCGCGATAGCACCAGC CGGCAGGTTTGCAAACGGCTCGCCAACAAGCGCCCGCTGGAGTGCATCGTCCGCCCCACG TACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCGCACCAAACCGATTGGGTTC ATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTACTATCACAAAATCATCGACTGG TCCGCGGCCGGGCAGATTGCGGCAATCTTCAGCAAAAAGCTCGTCATCTGGACACCCAAC ACGGACGAGATCATTGGGCTGGGGGCCCAGTACGCGACGTCGATCGCGTTCGAGCCGGCG GGCACCCGGCTGGGCATGGGCATTTTTATGATGAACCGACCGTGGCTGAACATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4306#0      ATTTTATCGGCTACAGTTATCATCGTACTTATTCATTTCGTCCGTCTTAGTCAGTTTTTT 60
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      TAGGACACAAAGTTAAAAAAACGCATTTTACCCTCGTCCCCTTGTGTGTACTAGTCTGTC 120
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      CGCGAAGACAAAGCTAAGTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGC 180
consensus_4306#1      -----------------GTGAATATGGCATTCGCGGTAAAGAAGCGCACCAACAACCGGC 43
                                       *******************************************

consensus_4306#0      TGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATC 240
consensus_4306#1      TGAACGAGATCGAAAAGCTTCAACAGCCGGCGAACTTTTTGCCCAATTCCTACGGTGATC 103
                      ************************************************************

consensus_4306#0      GATTTATTCCCCGTCGATACGCACTGTCCCGTTCGAGCCGGTACATGGCG-ACCGCGGAC 299
consensus_4306#1      GATTTATTCCCCGTCGATACGCACTGTCCCGATCGAGCCGGTTCAAGGCGGAAAGCATGC 163
                      ******************************* ********** ** **** *  **   *

consensus_4306#0      GATCTCGGCCAGCTGTACCCGTGGCG-CGAGGATGA--GATTGTGATCG--CCGACAGCG 354
consensus_4306#1      CGGAACAGAAAACGGATCCAATGGTGATGGAGATGCCTGGCTACTGGCGTACCCATCACT 223
                           * *  * * *  **  *** *  *  ****   *  *     **  ** *   * 

consensus_4306#0      AACCGATCCTGATCGCACTGTACCACGTCCCGAGC-CGCCAGGTGCTGTCGTATTATCAA 413
consensus_4306#1      ATTCGAGCGTGCTGAAAAGCCAGCTCGGGCTGGTCTCGACGCACGATAAGATACTGTCCT 283
                      *  *** * ** *   *    * * **  * *  * ** *    * *    ** * **  

consensus_4306#0      CGGCGCGAGAGT----GATTGTATCTTGACGACGCTTTCGTTCAACAAGCTTTCCGGCGA 469
consensus_4306#1      TC-CGCGATAGCACCAGCCGGCAGGTTTGCAAACGGCTCGC-CAACAAGCGCCCGCTGGA 341
                         ***** **     *   * *  **  * *     ***  ********   *    **

consensus_4306#0      GCTGGTCGTGTGCTACTCCTTCACGGATCT-CAGCAAACCACCCGAAATACTTGTTCTCG 528
consensus_4306#1      GTGCATCGTCCGCCCCACGTACAGCAACCAGCAGAAGCTGGACTGGAGCTGCCATCCGCG 401
                      *    ****  **  * * * **   * *  *** *      * * *       * * **

consensus_4306#0      CGTCGA-TGGATCGCGTG-GTGGATGTGATGCGCAATCACGATAACTGCATCGTACACCT 586
consensus_4306#1      CACCAAACCGATTGGGTTCATCGAAGCCGTGCACGATCTGCCCAACATCAAGACGTAC-T 460
                      *  * *   *** * **   * ** *   *** * ***     ***  **      ** *

consensus_4306#0      CCTGTGGAGTC--CGGATGGAAAGCAGCTGGCAAGTGTAGGGTATGATGAAACGCTCACG 644
consensus_4306#1      ATCACAAAATCATCGACTGGTCCGCGGCCGG-----GCAGATTGCGGC--AATCTTCAGC 513
                             * **  **  ***   ** ** **     * **  *  *    **   ***  

consensus_4306#0      ATTTGGAACTTCTTCGGTACCTCACCCACAAACGAATGCAAGAAGAGGAAGCTGCAATGC 704
consensus_4306#1      AAAAAGCTCGTCATCTGGACACCCAACACGGACGAGATCATTGGGCTGGGGGCCCAGTAC 573
                      *    *  * ** ** * **  *   ***  ****   **    *  *  *   ** * *

consensus_4306#0      GAACCGCCGGTCAGTAGCGGTAGTCACGGACCGATGGAAGAGCGTGTGGCAATGCTGGCA 764
consensus_4306#1      GCGACGTCGATC----GCGTT-----CGAGCCGGCGGGCACCCGGCTGGGCATG--GGCA 622
                      *   ** ** **    *** *     **  ***  **     **  ***  ***  ****

consensus_4306#0      GTTCCTGGGACGCTTCTCGCATCCCATGCAACCGTAACAAAGAAGCCACCTATCGTGTTC 824
consensus_4306#1      -TTTTTATGATGAACCGACCGTGGCTGAACATC--------------------------- 654
                       **  *  ** *   *   * *  *     * *                           

consensus_4306#0      TGGCCTCGAGTTTTCTTTTCAAGGCAATGCGCTGATGCTGCTATTCTTCAGAATGCCCAG 884
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      CCCGTAGAGTCTTACAGGAAAAGCAAAGGAACAGAAGTCCCCTTGTTGGAGTGAACGGTC 944
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      ATCGAATGCGAGTAGGTAATTAAATTAGAGACATAAATAATTACAAAGGGAGGAAGGAAA 1004
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      TGAAGACAAGCTTTTTCCACCTACGCTCCGGAGAAGATGAGGCAAGATAGGGGACACATT 1064
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      CGGACTGAGTTTGTTTACAGGCTGCTGGGCGGCCTTTCGATAACACAGCAGAGCAGATAG 1124
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      AATGCAAACGTTGTATAGGCATAGGTCCGATATTATAGTCGTTCCAGTTTGTTTATTTAT 1184
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      TTTATATTTAAAGTTCATTGTAAAGTTCATAAACCATCAAGAAGTTTGTTAAATCATTTT 1244
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      ACCGAGGCCTTCGTGCTTTAAACTCATCAAATGTGATCATAAGACTAGTTCTTTATTATT 1304
consensus_4306#1      ------------------------------------------------------------
                                                                                  

consensus_4306#0      TGATTTTTCTGGCGCAACTACCACAAGCCTATTAAAACATTGTTAGC 1351
consensus_4306#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)