These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1251 fasta sequence [CTGTGTGGTGCCGTTTTGTTTGGCTCCGCAAGTGAACACGCACAATTGCGCATCTAACACATCCGTTCATTTGTTGTACCATATTCTCGCAAACTCTTTTAGATCCCACGACGGATGATGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGTCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGTGTCCGTGCTGACACCGTTGGCGATAAAATTCAATCCTGCCGATACGGCTCTGGAGCTGTTTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCCTTCGTTCGTCGCTGCCTGCACAACGAGCTCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCCAGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAGCTACGCCAGACCGTGAACAGCATCACATCGGCCCACCTGGCACAGATCGATGAGCGGCTGCAGTCGTGCTGGACGGATCTAAAGCTGCCAAAGTTTTTCGTGCGCGAAAAAACTGACCCAAAGCAAACGCTGGGAAAGTTGGGCTATGGCGGAGTGTTTTGAAATAGACGATCTGCACGTTTTTCACGACTCCGGTCGGACGCGGCTAAATGGGTTCATTCAGCACTGCTACCTAGCGGTGAGCGAGAGCGGCAGCGGCATCCCCACACCACCGGACACACCCAGCGAGTTTGAGTTTCACGCCAACCGTCCGTTTATGTTTCTCATACGCCGTACAATGGACGGAAATGTGTTGCAAGTGGGCAACTTTTCCAAGTACATCGATCCCGATGAACAGTTTTGAGTGGGACGGATGTGTTTGTACAGTTGA] [+] EMBL CNS08SS5 [CTGTGTGGTGCCGTTTTGTTTGGCTCCGCAAGTGAACACGCACAATTGCGCATCTAACACATCCGTTCATTTGTTGTACCATATTCTCGCAAACTCTTTTAGATCCCACGACGGATGATGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGTCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGTGTCCGTGCTGACACCGTTGGCGATAAAATTCAATCCTGCCGATACGGCTCTGGAGCTGTTTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCCTTCGTTCGTCGCTGCCTGCACAACGAGCTCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCCAGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAGCTACGCCAGACCGTGAACAGCATCACATCGGCC ] [-] EMBL CNS08SS6 [ GCGACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGGTCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGTGTCCGTGCTGACACCGTTTGCGATTCGGTTCAATCCTGCCGATACGGCTCTGGAGCTGTTTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCCTTCGTTCGTCGCTGCCTGCACAACGAG TCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCCAGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAG TACGCCAGATCGTGAACAGCATCACATCGGCCCACCTGGCACAGATCGATGAGCGGCTGCAGTCGTGCTGGACGGATCTAAAGCTGCCAAAGTTTTTCGTGCGCGAAAAAACTGACCCAAAGCAAACGCTGGGAAAGTTGGGCTATGGCGGAGTGTTTTGAAATAGACGATCTGCACGTTTTTCACGACTCCGGTCGGACGCGGCTAAATGGGTTCATTCAGCACTGCTACCTAGCGGTGAGCGAGAGCGGCAGCGGCATCCCCACACCACCGGACACACCCAGCGAGTTTGAGTTTCACGCCAACCGTCCGTTTATGTTTCTCATACGCCGTACAATGGACGGAAATGTGTTGCAAGTGGGCAACTTTTCCAAGTACATCGATCCCGATGAACAGTTTTGAGTGGGACGGATGTGTTTGTACAGTTGA] consensusID : consensus_4313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [CACCGTNATCACGGACTCGGATCGGTTTCGTGCCTTTAATTTAGATGACATGCGATGATGTGTGCGTTTTTAGCAGTGCAGTGCAGCGCAACGCGCTAGATCCTACGACAGATGACGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGCCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCACCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTGTTCAGCGGTGTGTCCGTACTGACACCGTTGGCGATTCGGTTCAATCCTGCCGATACGGCGCTGGAGCTGGTTTCAATTTATAATGCGCCAACCAGCGTGTGTCCACCATGCACACGACAGNCCTTCGTTCGTCGCTGCCTG] [+] EMBL BX627618 [CACCGTNATCACGGACTCGGATCGGTTTCGTGCCTTTAATTTAGATGACATGCGATGATGTGTGCGTTTTTAGCAGTGCAGTGCAGCGCAACGCGCTAGATCCTACGACAGATGACGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGAGAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCCGCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGTGCATGCAGCCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCTGAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCGACTGTTTCACCGCACCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACCGTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCATCGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTGTTCAGCGGTGTGTCCGTACTGACACCGTTGGCGATTCGGTTCAATCCTGCCGATACGGCGCTGGAGCTGGTTTCAATTTATAATGCGCCAACCAGCGTGTGTCCACCATGCACACGACAGNCCTTCGTTCGTCGCTGCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4313#0 CTGTGTGGTGCCG--TTTTGTTTGGCTCCGCAAGTGAACACGCACAATTGCGCATCTAAC 58 consensus_4313#1 CACCGTNATCACGGACTCGGATCGGTTTCGTGCCTTTA---ATTTAGATG-ACATGCGAT 56 * ** * ** * * * ** * ** * * * ** *** * consensus_4313#0 ACATCCGTTCATTTGTTGTACCATATTCTCGCAAACTCTTTTAGATCCCACGACGGATGA 118 consensus_4313#1 G-ATGTGTGCGTTTTTAGCAGTGCAGTGCAGCGCAACGCGCTAGATCCTACGACAGATGA 115 ** ** * *** * * * * * ** * ******* ***** ***** consensus_4313#0 TGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGA 178 consensus_4313#1 CGCGATTGTAGCGGCGAACAACAAATTTACGCTCGAGTACTTCAAGGCATGCTACGATGA 175 *********************************************************** consensus_4313#0 GAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCC 238 consensus_4313#1 GAAGTGCAACTGTGCCGTCTCGCCGTATCACGTGCGGTTGGCACTGTCGATGTTCTATCC 235 ************************************************************ consensus_4313#0 GCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGT 298 consensus_4313#1 GCTTGCCGGTGCTGCAGTACAGGAAGACTTCCAGGTCGCGTTCGGGCTGCCGGAAGATGT 295 ************************************************************ consensus_4313#0 GCATGCAGTCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCT 358 consensus_4313#1 GCATGCAGCCATTGAGCAGCAGCAACGGCTAGCTCAGCAGCTGCACGATGGCCAACACCT 355 ******** *************************************************** consensus_4313#0 GAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCG 418 consensus_4313#1 GAAGGCACTTTCGTTCGTGCTGGTGGAGGAAACGCTCCGGCTGGACAGTGAGTTTGAGCG 415 ************************************************************ consensus_4313#0 ACTGTTTCACCGCATCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACC 478 consensus_4313#1 ACTGTTTCACCGCACCTTTCAGACCACGGTCGAGCCGGTCGATCTGACGGATGACATACC 475 ************** ********************************************* consensus_4313#0 GTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCAT 538 consensus_4313#1 GTCCGCGCTGGCCGTTAATTCCTTCTACCAGCGTGCCAACACCGAGATTGAAGATTTCAT 535 ************************************************************ consensus_4313#0 CGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTATTCAGCGGTGT 598 consensus_4313#1 CGGCGAGGGCGATGTGTTTTCGTTGCCTCCCTGTCACAAGCTGATGCTGTTCAGCGGTGT 595 ************************************************ *********** consensus_4313#0 GTCCGTGCTGACACCGTTGGCGATAAAATTCAATCCTGCCGATACGGCTCTGGAGCTG-T 657 consensus_4313#1 GTCCGTACTGACACCGTTGGCGATTCGGTTCAATCCTGCCGATACGGCGCTGGAGCTGGT 655 ****** ***************** ******************** ********* * consensus_4313#0 TTCAATTTATAAATGCGCCAACCCAGCGTGTGTCCACCATGCACACGACAGCC-TTCGTT 716 consensus_4313#1 TTCAATTTATAA-TGCGCCAACC-AGCGTGTGTCCACCATGCACACGACAGNCCTTCGTT 713 ************ ********** *************************** * ****** consensus_4313#0 CGTCGCTGCCTGCACAACGAGCTCCGCTGTAAGGTGGTGGACATGCCCTTCGATGCAGCC 776 consensus_4313#1 CGTCGCTGCCTG------------------------------------------------ 725 ************ consensus_4313#0 AGCGGACTGTCCATGCTGGTGCTGCTACCGTACGACGGCACGGAGCTACGCCAGACCGTG 836 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 AACAGCATCACATCGGCCCACCTGGCACAGATCGATGAGCGGCTGCAGTCGTGCTGGACG 896 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 GATCTAAAGCTGCCAAAGTTTTTCGTGCGCGAAAAAACTGACCCAAAGCAAACGCTGGGA 956 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 AAGTTGGGCTATGGCGGAGTGTTTTGAAATAGACGATCTGCACGTTTTTCACGACTCCGG 1016 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 TCGGACGCGGCTAAATGGGTTCATTCAGCACTGCTACCTAGCGGTGAGCGAGAGCGGCAG 1076 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 CGGCATCCCCACACCACCGGACACACCCAGCGAGTTTGAGTTTCACGCCAACCGTCCGTT 1136 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 TATGTTTCTCATACGCCGTACAATGGACGGAAATGTGTTGCAAGTGGGCAACTTTTCCAA 1196 consensus_4313#1 ------------------------------------------------------------ consensus_4313#0 GTACATCGATCCCGATGAACAGTTTTGAGTGGGACGGATGTGTTTGTACAGTTGA 1251 consensus_4313#1 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Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||