cluster # 4314

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4314 cluster # 4314 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4314#0 length = 906 sequences # 2

consensus_4314#1 length = 343 sequences # 1

consensusID : consensus_4314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 906
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTGTGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAGCATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGCCGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGCTGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCATCGGCATCATGAAGATATCGCCACACATCAGCAAGGACCTGCATCGGGACTTGCGCAAGAACTACGTCAAGTATGCGAAAGTGTTTCCCCTCTCGACACTGCTGGAGTTCAAAATACCCTCGAAATGGTACCGGCGATCGGTCGGCGGACTGGAGGTGCTGTGCGGGTTGGCCATGGTGCTCATTCCTAGCCATAAAATAAAAAATGCGGCCAACATAACGCTCCTGCTGTTGATGTTCCTGGCCGTCTACTCGCACTACATGGTAAGCGATCCGTTCGAACGATCCGGCCCGGCGCTCGTCTTCACCTTCATGCTGATCGGTAGGCTAGTGATATGGTATCAGGCAAGTCGACGAGAAGCGGCCCTAGCAGCTGCCGCACAGCCCACTGCCAATGGACTGAAGCAGGAGTAAGGTGGCCATCACCAGTACCACCACAACCACCACGAAATACTGCGTCCGGCTAACTGATCTCAGTTCCCTTCAGCCCGTAACGATGCATGGATACAGAAAGTGCAATAGAGCGCGCGCGCGAAAGAGAGAGAGAGATTCTTCATGCAACACAGCCAGCAATGCAACACACTAAACGAGGAAAGTCGAGTTCGAGTCTCGCTC]

[+] EMBL BM578029             [CCGCCCACGCGTCCGCCCACGCGTCCGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTGTGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAGCATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGCCGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGCTGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCATCGGCATCATGAAGATATCGCCACACATCAGCAAGGACCTGCATCGGGACTTGCGCAAGAACTACGTCAAGTATGCGAAAGTGTTTCCCCTCTCGACACTGCTGGAGTTCAAAATACCCTCGAAATGGTACCGGCGATCGGTCGGCGGACTGGAGGTGCTGTGCGGGTTGGCCATGGTGCTCATTCCTAGCCATAAAATAAAAAATGCGGCCAACATAACGCTCCTGCTGTTGATGTTCCTGGCCGTCTACTCGCACTACATGGTAAGCGATCCGTTCGAACGATCCGGCCCGGCGCTCGTCTTCACCTTCATGCTGATCGGTAGGCTAGTGA                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM639989             [                                                                                                                                                                                                                                                                                                                                                                           ccgGCGAAAGTGTTTCCCCTCTCGACACTGCTGGAGTTCAAAATACCCTCGAAATGGTACCGGCGATCGGTCGGCGGACTGGAGGGGCTGGGCGGGTTGGCCATGGTGCTCATTCCTAGCCATAAAATAAAAAATGCGGCCAACATAACGCTCCTGCTGTTGATGTTCCTGGCCGTCTACTCGCACTACATGGTAAGCGATCCGTTCGAACGATCCGGCCCGGCGCTCGTCTTCACCTTCATGCTGATCGGTAGGCTAGTGATATGGTATCAGGCAAGTCGACGAGAAGCGGCCCTAGCAGCTGCCGCACAGCCCACTGCCAATGGACTGAAGCAGGAGTAAGGTGGCCATCACCAGTACCACCACAACCACCACGAAATACTGCGTCCGGCTAACTGATCTCAGTTCCCTTCAGCCCGTAACGATGCATGGATACAGAAAGTGCAATAGAGCGCGCGCGCGAAAGAGAGAGAGAGATTCTTCATGCAACACAGCCAGCAATGCAACACACTAAACGAGGAAAGTCGAGTTCGAGTCTCGCTC]




>consensus_4314#0
CCGCCCACGCGTCCGCCCACGCGTCCGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTG
CGTGTTTGTGTGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTG
ACACGGAAAGCATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCT
CCCCCCCTGCCGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCC
TCGCTGGTGCTGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCATCGGCATC
ATGAAGATATCGCCACACATCAGCAAGGACCTGCATCGGGACTTGCGCAAGAACTACGTC
AAGTATGCGAAAGTGTTTCCCCTCTCGACACTGCTGGAGTTCAAAATACCCTCGAAATGG
TACCGGCGATCGGTCGGCGGACTGGAGGTGCTGTGCGGGTTGGCCATGGTGCTCATTCCT
AGCCATAAAATAAAAAATGCGGCCAACATAACGCTCCTGCTGTTGATGTTCCTGGCCGTC
TACTCGCACTACATGGTAAGCGATCCGTTCGAACGATCCGGCCCGGCGCTCGTCTTCACC
TTCATGCTGATCGGTAGGCTAGTGATATGGTATCAGGCAAGTCGACGAGAAGCGGCCCTA
GCAGCTGCCGCACAGCCCACTGCCAATGGACTGAAGCAGGAGTAAGGTGGCCATCACCAG
TACCACCACAACCACCACGAAATACTGCGTCCGGCTAACTGATCTCAGTTCCCTTCAGCC
CGTAACGATGCATGGATACAGAAAGTGCAATAGAGCGCGCGCGCGAAAGAGAGAGAGAGA
TTCTTCATGCAACACAGCCAGCAATGCAACACACTAAACGAGGAAAGTCGAGTTCGAGTC
TCGCTC

consensusID : consensus_4314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [TGTGTTTATTGATGGTTAATAGAAGCATTTTCCTGTGCCAGTGTTTTAATAAGTGAAGCCATTTGAAGCAAAAAAAGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTGTGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAGCATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGCCGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGCTGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCAT]

[+] EMBL BM610063             [TGTGTTTATTGATGGTTAATAGAAGCATTTTCCTGTGCCAGTGTTTTAATAAGTGAAGCCATTTGAAGCAAAAAAAGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTGTGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAGCATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGCCGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGCTGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCAT]




>consensus_4314#1
TGTGTTTATTGATGGTTAATAGAAGCATTTTCCTGTGCCAGTGTTTTAATAAGTGAAGCC
ATTTGAAGCAAAAAAAGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTG
TGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAG
CATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGC
CGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGC
TGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4314#0      --------------------------------------------------CCGCCCACGC 10
consensus_4314#1      TGTGTTTATTGATGGTTAATAGAAGCATTTTCCTGTGCCAGTGTTTTAATAAGTGAAGCC 60
                                                                          *   *  *

consensus_4314#0      GTCCGCCCACGCGTCCGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTG 70
consensus_4314#1      ATTTGAAGCAAAAAAAGAGCAATTGCGTTGATTGAGCTGTGTATCCAGTGCGTGTTTGTG 120
                       *  *           ********************************************

consensus_4314#0      TGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAG 130
consensus_4314#1      TGTGTGTGCGCGCGTTTGTGTGTCTAAAGAAAACGCCCCTCACCGAAGTGACACGGAAAG 180
                      ************************************************************

consensus_4314#0      CATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGC 190
consensus_4314#1      CATTGCTTGCCCAGCAAGCTTAGCGCTGTTCTGATAGTTCATCCTTCCCTCCCCCCCTGC 240
                      ************************************************************

consensus_4314#0      CGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGC 250
consensus_4314#1      CGGTACCGTTAAAAGCCGTCAAAATTACGCAAAACACGCAAAAGATGTCCTCGCTGGTGC 300
                      ************************************************************

consensus_4314#0      TGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCATCGGCATCATGAAGATAT 310
consensus_4314#1      TGAGGAGCCTCTCGATACTGCTCGGGCTGTTCTTCATATTCAT----------------- 343
                      *******************************************                 

consensus_4314#0      CGCCACACATCAGCAAGGACCTGCATCGGGACTTGCGCAAGAACTACGTCAAGTATGCGA 370
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      AAGTGTTTCCCCTCTCGACACTGCTGGAGTTCAAAATACCCTCGAAATGGTACCGGCGAT 430
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      CGGTCGGCGGACTGGAGGTGCTGTGCGGGTTGGCCATGGTGCTCATTCCTAGCCATAAAA 490
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      TAAAAAATGCGGCCAACATAACGCTCCTGCTGTTGATGTTCCTGGCCGTCTACTCGCACT 550
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      ACATGGTAAGCGATCCGTTCGAACGATCCGGCCCGGCGCTCGTCTTCACCTTCATGCTGA 610
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      TCGGTAGGCTAGTGATATGGTATCAGGCAAGTCGACGAGAAGCGGCCCTAGCAGCTGCCG 670
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      CACAGCCCACTGCCAATGGACTGAAGCAGGAGTAAGGTGGCCATCACCAGTACCACCACA 730
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      ACCACCACGAAATACTGCGTCCGGCTAACTGATCTCAGTTCCCTTCAGCCCGTAACGATG 790
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      CATGGATACAGAAAGTGCAATAGAGCGCGCGCGCGAAAGAGAGAGAGAGATTCTTCATGC 850
consensus_4314#1      ------------------------------------------------------------
                                                                                  

consensus_4314#0      AACACAGCCAGCAATGCAACACACTAAACGAGGAAAGTCGAGTTCGAGTCTCGCTC 906
consensus_4314#1      --------------------------------------------------------