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Anopheles gambiae
cluster # 4319 cluster # 4319       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4319#0 length = 667 sequences # 2  
consensus_4319#1 length = 665 sequences # 1  

consensusID : consensus_4319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence
                              [AGCATACGCCAGGATTCTCNC-GCTAGTTGCGTGTGCTTCGGGTGCGGTATTAC-ACGCGGCAACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCC-CTTCCGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGGTCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAGCGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAACAACAAAT]

[+] EMBL BX619939             [AGCATACGCCAGGATTCTCNC GCTAGTTGCGTGTGCTTCGGGTGCGGTATTAC ACGCGGCAACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCC CTTCCGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCA                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM657245             [         ccgcATTCACGCTGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACAACGCGGCAACCTCAGCTCATTAAATTCACCCCCCC TGGGATATATCTCCCCCCCCCCCACTTCGGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATTTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTT GCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGGTCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAGCGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAACAACAAAT]


>consensus_4319#0 AGCATACGCCAGGATTCTCNCGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACACGCGGC AACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCCCTTCCGTT TGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGG TGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGG TGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGAC CGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCAG GGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGAC GAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCC AGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGG TCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAG CGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAAC AACAAAT



consensusID : consensus_4319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG]

[+] EMBL AL932521             [GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG]


>consensus_4319#1 GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAG AGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGT GCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAA ATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAA ACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGAT CGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCC CTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAG CGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACG GGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCC CGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCT TNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCG GAGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4319#0      AGCATACGCCAGGATTCTCNCGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACACGCGGC 60
consensus_4319#1      ------------------------------------------------------------
                                                                                  

consensus_4319#0      AACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCCCTTCCGTT 120
consensus_4319#1      ------------------------------------------------------------
                                                                                  

consensus_4319#0      TGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGG 180
consensus_4319#1      ------------------------------------------------------------
                                                                                  

consensus_4319#0      TGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGG 240
consensus_4319#1      ------------------------------------------------------------
                                                                                  

consensus_4319#0      TGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGAC 300
consensus_4319#1      ------------------------------------------GGCAGAATCCCCCGAGGT 18
                                                                  * *  *    ** *  

consensus_4319#0      -CGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCA 359
consensus_4319#1      ACGGTTGC-ATCGGCGACGGGTGATTCATAGTTG-CGCATAGAGAGGGCAACACCAAGCA 76
                       ******* ************************  ***  ********************

consensus_4319#0      GGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGA 419
consensus_4319#1      GGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGA 136
                      ************************************************************

consensus_4319#0      CGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTT-AAATTTAAGCGGGACCAC 478
consensus_4319#1      CGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCAC 196
                      ***************************************** ******************

consensus_4319#0      CCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAAC-GCCGTCGACGTAC 537
consensus_4319#1      CCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTAC 256
                      ********************************************** *************

consensus_4319#0      CGGTCGACA-CCGTCGGTATACTC--GCACATTACCAGC-CGATCGCAATCCAATCTGCA 593
consensus_4319#1      CGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGA 316
                      ********  **********   *  ************* ****** *********** *

consensus_4319#0      -CTCGCAGC-GATCGCGCTCGA-TGAAGTCTGTCAT--GGTGCCCTGGT-ACCA-GAAGC 646
consensus_4319#1      GCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGC 376
                       ******** ************ ******* *****  *********** **** *****

consensus_4319#0      CGCTCCTGCACAACAACAAAT--------------------------------------- 667
consensus_4319#1      CGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCAC 436
                      *********     ** **                                         

consensus_4319#0      ------------------------------------------------------------
consensus_4319#1      ATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGG 496
                                                                                  

consensus_4319#0      ------------------------------------------------------------
consensus_4319#1      AATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNG 556
                                                                                  

consensus_4319#0      ------------------------------------------------------------
consensus_4319#1      TAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGC 616
                                                                                  

consensus_4319#0      -------------------------------------------------
consensus_4319#1      CACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG 665
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)