These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [AGCATACGCCAGGATTCTCNC-GCTAGTTGCGTGTGCTTCGGGTGCGGTATTAC-ACGCGGCAACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCC-CTTCCGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGGTCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAGCGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAACAACAAAT] [+] EMBL BX619939 [AGCATACGCCAGGATTCTCNC GCTAGTTGCGTGTGCTTCGGGTGCGGTATTAC ACGCGGCAACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCC CTTCCGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCA ] [+] EMBL BM657245 [ ccgcATTCACGCTGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACAACGCGGCAACCTCAGCTCATTAAATTCACCCCCCC TGGGATATATCTCCCCCCCCCCCACTTCGGTTTGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGGTGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATTTGCATACATATCGGTGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGACCGGTTGCCATCGGCGACGGGTGATTCATAGTT GCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACGCCGTCGACGTACCGGTCGACACCGTCGGTATACTCGCACATTACCAGCCGATCGCAATCCAATCTGCACTCGCAGCGATCGCGCTCGATGAAGTCTGTCATGGTGCCCTGGTACCAGAAGCCGCTCCTGCACAACAACAAAT] consensusID : consensus_4319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG] [+] EMBL AL932521 [GGCAGAATCCCCCGAGGTACGGTTGCATCGGCGACGGGTGATTCATAGTTGCGCATAGAGAGGGCAACACCAAGCAGGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGACGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCACCCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTACCGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGAGCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGCCGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCACATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGGAATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNGTAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGCCACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4319#0 AGCATACGCCAGGATTCTCNCGCTAGTTGCGTGTGCTTCGGGTGCGGTATTACACGCGGC 60 consensus_4319#1 ------------------------------------------------------------ consensus_4319#0 AACCTCAGCTCATTAAATTCACCCCCCCTTGGGATATATCTCCCCCATCCCCCTTCCGTT 120 consensus_4319#1 ------------------------------------------------------------ consensus_4319#0 TGTGTCACGGTGTGTTTGTGGTGCGTGTCACGCTTGACGGTGCTTGCCGTACGATCACGG 180 consensus_4319#1 ------------------------------------------------------------ consensus_4319#0 TGTGCGTGGTGACAGTACAGACAGAGCCGAGTGAATTGTGAAGATCTGCATACATATCGG 240 consensus_4319#1 ------------------------------------------------------------ consensus_4319#0 TGCGCTGTGTGAGTTGGCAGACTCTGGTGGTGTCTAGGTGTATACGGTGTTTTTCGTGAC 300 consensus_4319#1 ------------------------------------------GGCAGAATCCCCCGAGGT 18 * * * ** * consensus_4319#0 -CGGTTGCCATCGGCGACGGGTGATTCATAGTTNGCGCCAAGAGAGGGCAACACCAAGCA 359 consensus_4319#1 ACGGTTGC-ATCGGCGACGGGTGATTCATAGTTG-CGCATAGAGAGGGCAACACCAAGCA 76 ******* ************************ *** ******************** consensus_4319#0 GGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGA 419 consensus_4319#1 GGGGCAGTCCAGAAAATCGATATCACAGTGAAGAAAGCAGCAGTGCACAGTACCATCGGA 136 ************************************************************ consensus_4319#0 CGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTT-AAATTTAAGCGGGACCAC 478 consensus_4319#1 CGAACCACAGCAGACGACTGCGGCCCATCGAAAAGGAGGTTCAAATTTAAGCGGGACCAC 196 ***************************************** ****************** consensus_4319#0 CCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAAC-GCCGTCGACGTAC 537 consensus_4319#1 CCAGAGCTGCCTAAACGTGCCGCACAATGAACTACGGACGCAAAACTGCCGTCGACGTAC 256 ********************************************** ************* consensus_4319#0 CGGTCGACA-CCGTCGGTATACTC--GCACATTACCAGC-CGATCGCAATCCAATCTGCA 593 consensus_4319#1 CGGTCGACNACCGTCGGTATNNNCTCGCACATTACCAGCGCGATCGNAATCCAATCTGGA 316 ******** ********** * ************* ****** *********** * consensus_4319#0 -CTCGCAGC-GATCGCGCTCGA-TGAAGTCTGTCAT--GGTGCCCTGGT-ACCA-GAAGC 646 consensus_4319#1 GCTCGCAGCTGATCGCGCTCGAGTGAAGTCCGTCATTGGGTGCCCTGGTTACCAAGAAGC 376 ******** ************ ******* ***** *********** **** ***** consensus_4319#0 CGCTCCTGCACAACAACAAAT--------------------------------------- 667 consensus_4319#1 CGCTCCTGCGAGCAAANAAGCGGNACACTATCTGGANCATTCAGCGCGGGNGCCCTTCAC 436 ********* ** ** consensus_4319#0 ------------------------------------------------------------ consensus_4319#1 ATACAATNGGTGGACCCTTGGTATACTACCGNAGTCNCTCTACGGGTNGAGGGACTGAGG 496 consensus_4319#0 ------------------------------------------------------------ consensus_4319#1 AATACCTCTTTCNAACNGGCATACTCGGGGTCAACTCAGGNGCCCGTCGGGTTTATCTNG 556 consensus_4319#0 ------------------------------------------------------------ consensus_4319#1 TAGGAGACAATANCTNAAACTTTGGGCTTCAGCACACGAGACCTTNGGGCAAGGTCATGC 616 consensus_4319#0 ------------------------------------------------- consensus_4319#1 CACCGGGGGGGACNTTNCNAGGTNCGCNCCACACCTTCCAAGCGGAGGG 665 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||