These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4331#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTTGAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGTGTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCATAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTGTGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTCTAT-TATATATATACATATTATACCCTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTA] [+] EMBL BX612774 [TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTTGAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGTGTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCATAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTGTGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTCTAT TATATATATACATATTATACCCTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCC ] [+] EMBL BX618074 [ GGCGAGGTGTGAAGGTTCTGTGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCTATAGGATGACACTATTATACACTCTATATATATATATACATATTATACCCTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTACTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTA] consensusID : consensus_4331#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TAAACAGGGAACAGTTATTACGTCTAAATAGTATGTCTTACTATTCACCTCAGCTTATCGAAATCGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTATATATATATATATACATATTATACCCTTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTAG] [+] EMBL BX613445 [TAAACAGGGAACAGTTATTACGTCTAAATAGTATGTCTTACTATTCACCTCAGCTTATCGAAATCGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTATATATATATATATACATATTATACCCTTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4331#0 TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTT 60 consensus_4331#1 ------------------------------------------------------------ consensus_4331#0 GAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGT 120 consensus_4331#1 ------------------------------------------------------------ consensus_4331#0 GTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCA 180 consensus_4331#1 ------------------------------------------------------------ consensus_4331#0 TAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTG 240 consensus_4331#1 --------------------------------------TAAACAGGGAAC--AGTTATTA 20 * * ** ** * * consensus_4331#0 TGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAG 300 consensus_4331#1 CGTCTAAATAGTATGT-CTTACTATTCACCTCAGCTT-----ATCGAAATCGAAAGAGAG 74 * * * ** * *** ** * * ** * ********* consensus_4331#0 ACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAAT 360 consensus_4331#1 ACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAAT 134 ************************************************************ consensus_4331#0 ACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTT 420 consensus_4331#1 ACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTT 194 ************************************************************ consensus_4331#0 GCCGATAGGATGACACTATTATACACTCTAT-TATATATATACATATTATACCCTTTTTT 479 consensus_4331#1 GCCGATAGGATGACACTATTATACACTATATATATATATATACATATTATACCCTTTTTT 254 *************************** *** **************************** consensus_4331#0 -AAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCA 538 consensus_4331#1 TAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCA 314 *********************************************************** consensus_4331#0 CTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATG 598 consensus_4331#1 CTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATG 374 ************************************************************ consensus_4331#0 CTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAA 658 consensus_4331#1 CTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAA 434 ************************************************************ consensus_4331#0 GACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCT 718 consensus_4331#1 GACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCT 494 ************************************************************ consensus_4331#0 TCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTT 778 consensus_4331#1 TCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTT 554 ************************************************************ consensus_4331#0 TACAATCTCTCATTCATACACACACACATACGCCTA- 814 consensus_4331#1 TACAATCTCTCATTCATACACACACACATACGCCTAG 591 ************************************ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||