These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence [CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGCGTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAACACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAATATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACAACGTAGTCAGATCAGCACCACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTCGAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGACCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGTCGCCGAACACGCCGAGTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATACCGGCCGGCGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGCCGCGCTACCGGCAGCTGCTCGAGCTGATGCCGGGCGCGATGATGAGCGAGCAGGGCAACATTATGCTGGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCGTACCTGGACCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCC] [+] EMBL BM617080 [CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGCGTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAACACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAATATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACAACGTAGTCAGATCAGCACCACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTCGAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGACCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGTCGCCGAACACGCCGAGTACGGCGGCCTTGGACTG ] [+] EMBL BM610505 [ ccgCCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTCGAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGACCGCATCCGGCGCGTCGAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGTCGCCGAACACGCCGAGTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATACCGGCCGGCGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGCCGCGCTACCGGCAGCTGCTCGAGCTGATGCCGGGCGCGATGATGAGCGAGCAGGGCAACATTATGCTGGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCGTACCTGGACCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCC] consensusID : consensus_4333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCCTGAAGCTGTGCAAGCACATCGCCCGCCAGTACGGGTTCATCCGGAGGTTTGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGTTCCGCTGGGCTGTCTCGACGGTTATGACACGACAGAACAAAGTACCGGTCAATCTGGCCGAGTTCGACGGGATGGACCACACGCTGGCACTGATCCCGCTCTGGGATATGGCAAACCACGCATTTCCCGACACCGCGAACGAGACTCGATGCGTGGCCGAAACCTGTTACAACGCCACCAACGAGCAGCTGGAGTGTAGCCTGACGCGGGAAGTAAGCGACATCGCCAGCGTGCCAATTTTCATCGTTTACGGCACGAGAACGGATGCCGAATTTCTCGTGCACAATGGCTTTGTCTGCCCCCGTAACCCGCACGCGAACGTACAGAAGCGCTTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCGGGCGCACCT] [+] EMBL BM577061 [CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCCTGAAGCTGTGCAAGCACATCGCCCGCCAGTACGGGTTCATCCGGAGGTTTGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGTTCCGCTGGGCTGTCTCGACGGTTATGACACGACAGAACAAAGTACCGGTCAATCTGGCCGAGTTCGACGGGATGGACCACACGCTGGCACTGATCCCGCTCTGGGATATGGCAAACCACGCATTTCCCGACACCGCGAACGAGACTCGATGCGTGGCCGAAACCTGTTACAACGCCACCAACGAGCAGCTGGAGTGTAGCCTGACGCGGGAAGTAAGCGACATCGCCAGCGTGCCAATTTTCATCGTTTACGGCACGAGAACGGATGCCGAATTTCTCGTGCACAATGGCTTTGTCTGCCCCCGTAACCCGCACGCGAACGTACAGAAGCGCTTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCGGGCGCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4333#0 CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGC 60 consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 GTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAA 120 consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 CACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAAT 180 consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 ATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACA-ACGTAGTCAGATCAGCAC 239 consensus_4333#1 ---------CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGAC 51 * ** * **** * ** * **** * * * * ** consensus_4333#0 CACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCC-CCACCA-AAGCCCT 297 consensus_4333#1 GGACGCGTTTCTGCCGGCCCTGAAGCTGTGCAAGCA-CATCGCCCGCCAGTACGGGTTCA 110 * ** * ** ** * * * * * * ***** *** * * * consensus_4333#0 CTCGAAGGGTAAGGTGAAAGA-GCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGT 356 consensus_4333#1 TCCGGAGGTTTGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGT 170 ** *** * * *** * ** *** **** *** * * * * * * ** consensus_4333#0 TCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGC 416 consensus_4333#1 TCCGCTGGGCT----GTCTCGACGG--TTATGACACGACAGAACAAAGTA-CCGGTCAAT 223 **** *** ** ***** * ** * * ** * * * **** consensus_4333#0 TGGACCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGG 476 consensus_4333#1 CTGGCCGAGTTCGACGGGA-TGGACCACACGCTG--GCACTGATCC-CGCTCTGGGATAT 279 * *** * ** ** * * * *** * * * *** * ** * **** consensus_4333#0 AAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGC 536 consensus_4333#1 GGCAAACCACGCATTTCCCGACACCG-CGAACGAGACTCGATGCGTGGCCGAAACCTGTT 338 * ** ** * * ** **** * *** ** **** consensus_4333#0 GCGTCGCCG--AACACGCCGA-GTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATAC 593 consensus_4333#1 ACAACGCCACCAACGAGCAGCTGGAGTGTAGCCTGACGCGGGAA----GTAAGC-GACAT 393 * **** *** ** * * * * **** * **** ** ** * * consensus_4333#0 CGGCCGGCGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGC 653 consensus_4333#1 CG-CCAGCGTGCCAATTTTCATCGTTT---ACGGCACGAGAACGGATGCCG--AATTTCT 447 ** ** *** *** *** *** *** * * * * ** consensus_4333#0 CGCGCTACCGGCAGCTGCTCGAGCTGATGCCG-GGCGCGATGATGAGCGAGCAGGGCAAC 712 consensus_4333#1 CGTGC-----ACAATGGCTTTGTCTGCCCCCGTAACCCGCACGCGAACGTACAGAAGCGC 502 ** ** ** *** *** *** * ** ** ** *** * consensus_4333#0 ATTATGCTGGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCG 772 consensus_4333#1 TTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCGGGCGCACCT------------- 549 *** **** ** *** * ** * * ****** * consensus_4333#0 TACCTGGACCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATG 832 consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 GGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCC 869 consensus_4333#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||