cluster # 4355

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Anopheles gambiae
cluster # 4355 cluster # 4355 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4355#0 length = 655 sequences # 1

consensus_4355#1 length = 567 sequences # 1
consensus_4355#2 length = 565 sequences # 1

consensusID : consensus_4355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGTAGGAAGTGTTTCGCGCGCGCGGCCTCTCTGCCTACTAAGCAAGCCGCCCGGAGGAAACAGTGAACCACTTTGACCGTGCATACAGCCACGCAAGTTTTCGTGAACAGTTTGCTTTTCGTCAATGTAAAACAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCTCTCGATGCAGGACATCGATCGGGATCCGCCGGGCAGTGGCACAGGAAGTGTGATAGGCATGACACGTCTGCTGTCGTCCAACGGTGGCAGCAGCTCCGGAGCACGTACAAAGGAACCCACGCCTCGGTTGGACCGCGATCGGTGCACGACATTACTGGCAGGCAGCAGCAGTGCC]

[+] EMBL BM588367             [CCGTAGGAAGTGTTTCGCGCGCGCGGCCTCTCTGCCTACTAAGCAAGCCGCCCGGAGGAAACAGTGAACCACTTTGACCGTGCATACAGCCACGCAAGTTTTCGTGAACAGTTTGCTTTTCGTCAATGTAAAACAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCTCTCGATGCAGGACATCGATCGGGATCCGCCGGGCAGTGGCACAGGAAGTGTGATAGGCATGACACGTCTGCTGTCGTCCAACGGTGGCAGCAGCTCCGGAGCACGTACAAAGGAACCCACGCCTCGGTTGGACCGCGATCGGTGCACGACATTACTGGCAGGCAGCAGCAGTGCC]




>consensus_4355#0
CCGTAGGAAGTGTTTCGCGCGCGCGGCCTCTCTGCCTACTAAGCAAGCCGCCCGGAGGAA
ACAGTGAACCACTTTGACCGTGCATACAGCCACGCAAGTTTTCGTGAACAGTTTGCTTTT
CGTCAATGTAAAACAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAA
GAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGG
TAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGC
TGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCG
ACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAA
CCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCT
CTCGATGCAGGACATCGATCGGGATCCGCCGGGCAGTGGCACAGGAAGTGTGATAGGCAT
GACACGTCTGCTGTCGTCCAACGGTGGCAGCAGCTCCGGAGCACGTACAAAGGAACCCAC
GCCTCGGTTGGACCGCGATCGGTGCACGACATTACTGGCAGGCAGCAGCAGTGCC

consensusID : consensus_4355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CCGCCCACGCGTCCGGATAGGAAGTGTTTCGCGCGCGCGGCCTCTCTGCCTACTAAGCAAGCCGCCCGGAGGAAACAGTGAACCACTTTGACCGTGCATACAGCCACGCAAGTTTTCGTGAACAGTTTGCTTTTCGTCAATGTAAAACGTAAGCGCAGAGAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCTCTCGATGCAGGACATCGATCGGGATCC]

[+] EMBL BM632772             [CCGCCCACGCGTCCGGATAGGAAGTGTTTCGCGCGCGCGGCCTCTCTGCCTACTAAGCAAGCCGCCCGGAGGAAACAGTGAACCACTTTGACCGTGCATACAGCCACGCAAGTTTTCGTGAACAGTTTGCTTTTCGTCAATGTAAAACGTAAGCGCAGAGAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCTCTCGATGCAGGACATCGATCGGGATCC]




>consensus_4355#1
CCGCCCACGCGTCCGGATAGGAAGTGTTTCGCGCGCGCGGCCTCTCTGCCTACTAAGCAA
GCCGCCCGGAGGAAACAGTGAACCACTTTGACCGTGCATACAGCCACGCAAGTTTTCGTG
AACAGTTTGCTTTTCGTCAATGTAAAACGTAAGCGCAGAGAATAAGTGTGTTTGCTTGTC
TAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAA
GAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGG
TAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGC
TGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCG
ACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAA
CCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCT
CTCGATGCAGGACATCGATCGGGATCC

consensusID : consensus_4355#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AAAATAAATTTATTTATTTAACTATTGTTATATGCACGTTTGTCATAGAGTCGGCCGAGGGAGAGTAATTATTGAAGTAACAAGTAATATCAAGTGTTTCGTTCGTAAACCCAATAAATGAACTCCTAGTTTCCGAGTTTTTTGTACTGATAAGTTTGTTATTCCAACGCGCAGCGCAGAGAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCTCCGG]

[-] EMBL BM651976             [AAAATAAATTTATTTATTTAACTATTGTTATATGCACGTTTGTCATAGAGTCGGCCGAGGGAGAGTAATTATTGAAGTAACAAGTAATATCAAGTGTTTCGTTCGTAAACCCAATAAATGAACTCCTAGTTTCCGAGTTTTTTGTACTGATAAGTTTGTTATTCCAACGCGCAGCGCAGAGAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTACACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGCCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGACTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCATTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGAGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGCCTCCGATTCGGGCGTGTTCCTCCGG]




>consensus_4355#2
AAAATAAATTTATTTATTTAACTATTGTTATATGCACGTTTGTCATAGAGTCGGCCGAGG
GAGAGTAATTATTGAAGTAACAAGTAATATCAAGTGTTTCGTTCGTAAACCCAATAAATG
AACTCCTAGTTTCCGAGTTTTTTGTACTGATAAGTTTGTTATTCCAACGCGCAGCGCAGA
GAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTACA
CCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTGC
CATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGAC
TGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCAT
TACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTGA
GAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCGC
CTCCGATTCGGGCGTGTTCCTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4355#0      -------------CCG--TAGGAAGTGTTTCGCGCGCGCG-GCCTCTCTGCCTACTAAGC 44
consensus_4355#1      -CCGCCCACGCGTCCGGATAGGAAGTGTTTCGCGCGCGCG-GCCTCTCTGCCTACTAAGC 58
consensus_4355#2      AAAATAAATTTATTTATTTAACTATTGTTATATGCACGTTTGTCATAGAGTCGGCCGAGG 60
                                        **   * ****    ** **   * *     * *  *  ** 

consensus_4355#0      AAGC----CGCCCGGAGGAAACAGTGA-----ACCACTTTGACCGTGCATACAGCCACGC 95
consensus_4355#1      AAGC----CGCCCGGAGGAAACAGTGA-----ACCACTTTGACCGTGCATACAGCCACGC 109
consensus_4355#2      GAGAGTAATTATTGAAGTAACAAGTAATATCAAGTGTTTCGTTCGTAAACCCAATAAATG 120
                       **          * ** **  *** *     *    ** *  ***  *  **   *   

consensus_4355#0      AAGTTTTCGTGAACAGTTTGCTT-----------TTCGTCAATGTAAAAC---------- 134
consensus_4355#1      AAGTTTTCGTGAACAGTTTGCTT-----------TTCGTCAATGTAAAACGTAAGCGCAG 158
consensus_4355#2      AACTCCTAGTTTCCGAGTTTTTTGTACTGATAAGTTTGTTATTCCAACGCGCA-GCGCAG 179
                      ** *  * **   *   **  **           ** ** * *  **  *          

consensus_4355#0      ------------------------------------AGCGCTGAGCAAACGGCAAGCTAC 158
consensus_4355#1      AGAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTAC 218
consensus_4355#2      AGAATAAGTGTGTTTGCTTGTCTAACCTACATACAGAGCGCTGAGCAAACGGCAAGCTAC 239
                                                          ************************

consensus_4355#0      ACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTG 218
consensus_4355#1      ACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTG 278
consensus_4355#2      ACCGCGAAAAGCTTCAGAAGAAGAGTGTTCGTTGTGGTTCAAATAATCTTCAAATTGGTG 299
                      ************************************************************

consensus_4355#0      CCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGA 278
consensus_4355#1      CCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGA 338
consensus_4355#2      CCATAGTTTGCTATTACGGCGGTAAGATGGCAGCAGTAGCGGCGACCGCGCAAGAAATGA 359
                      ************************************************************

consensus_4355#0      CTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCA 338
consensus_4355#1      CTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCA 398
consensus_4355#2      CTGACAGTGTAACGAGAGCGGCTGGAACGGCCGGGTCATCAACAGCGATAGTACCAATCA 419
                      ************************************************************

consensus_4355#0      TTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTG 398
consensus_4355#1      TTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTG 458
consensus_4355#2      TTACGCTCCCGGGAGTGTTCCGACGGCGCATGGAGAACCTGAAACACAACAGTGAGTGTG 479
                      ************************************************************

consensus_4355#0      AGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCG 458
consensus_4355#1      AGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCG 518
consensus_4355#2      AGAATGATGAGCAGCGTCACAACCAAACACTACCATCGTTTGCCGACGCAAAGATGGCCG 539
                      ************************************************************

consensus_4355#0      CCTCCGATTCGGGCGTGTTCCTCTCGATGCAGGACATCGATCGGGATCCGCCGGGCAGTG 518
consensus_4355#1      CCTCCGATTCGGGCGTGTTCCTCTCGATGCAGGACATCGATCGGGATCC----------- 567
consensus_4355#2      CCTCCGATTCGGGCGTGTTCCTCCGG---------------------------------- 565
                      ***********************  *                                  

consensus_4355#0      GCACAGGAAGTGTGATAGGCATGACACGTCTGCTGTCGTCCAACGGTGGCAGCAGCTCCG 578
consensus_4355#1      ------------------------------------------------------------
consensus_4355#2      ------------------------------------------------------------
                                                                                  

consensus_4355#0      GAGCACGTACAAAGGAACCCACGCCTCGGTTGGACCGCGATCGGTGCACGACATTACTGG 638
consensus_4355#1      ------------------------------------------------------------
consensus_4355#2      ------------------------------------------------------------
                                                                                  

consensus_4355#0      CAGGCAGCAGCAGTGCC 655
consensus_4355#1      -----------------
consensus_4355#2      -----------------