These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAAGGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTCCGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACCACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCGCCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCTCAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGGCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAGTTTAGTAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGTCATACACG] [+] EMBL BX626402 [GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAAGGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTCCGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACCACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCGCCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCTCAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGGCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAG ] [+] EMBL BM648764 [ ccgGAGCAGTGTCACGGAGCAGGATACTACTACGGTGAGCCCCGTTACCACCACCGAGCCAGAGTCCGTACCGACGCCGGCGAAGCAGAAGGCCAAGAAGCAAGTTCCGCCGAACCTTAAAGGATACAGTAAGCGTCTGAAGCTGCAGGAAGCGCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAATGCAGATAATGCAGCTCAAGGAGGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTCTGGCCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAGATAAGGAATAGTTTAGTAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGTCATACACG] consensusID : consensus_4356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GCAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCCCGTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAGAAAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAGCGCAACGGAAAG] [+] EMBL BX468786 [GCAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAACCGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGAACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCAGCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAGTGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCCCGTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAGAAAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAGCGCAACGGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4356#0 GAGTGTGGATGCGGTAGTGGAATCCAAGGCAGAAGCTCCTAAAGCCGCTGAGGTTAGCAA 60 consensus_4356#1 ------------------------------------------------------------ consensus_4356#0 GGAAGCAGAAAGCAAATCGACACCCGAAGCCGTTGTGATCGTGATGCCAAGCGTAAAGTC 120 consensus_4356#1 -----------------------------------------------------------G 1 consensus_4356#0 CGAAGACGTTACCACGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAAC 180 consensus_4356#1 CAGAATCGCGCACGAGGTCGTTGCAAGCGTTGCTGAGAACACGGATAAGCCCGCCGAAAC 61 * * ** * ********************************************* consensus_4356#0 CGCGGAAGACAA-GCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGA 239 consensus_4356#1 CGCGGAAGACAAAGCTGTGCCGGAGGTACGCTCTGCCGGTGCGTCGGATGAGCTTCCCGA 121 ************ *********************************************** consensus_4356#0 ACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCA 299 consensus_4356#1 ACCGGCCACGACGGCGAAAGTCGAGGAGCAGCAGGCAAAAGCCGCGGAAGGGAGTTCTCA 181 ************************************************************ consensus_4356#0 GCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAG 359 consensus_4356#1 GCCGGGTGCAAGTGAAAGCTCGGATACCGTTCAAGAAGACGCTCAGGATCAAAGTGACAG 241 ************************************************************ consensus_4356#0 TGTCAGTACAACAGTGAGCAGTGTCACGGAG-CAGGATACTA--CTACGGTGAG--CCCC 414 consensus_4356#1 TGTCAGTACAACAGTGAGCAGTGTCACGGAGGCAGGATACTTACCTACGGTGGAGCCCCC 301 ******************************* ********* ******** **** consensus_4356#0 GTTACCACCACCGAGCC--AGAGTCCGTACCGACGCC--GGCGAAG-CAGAAGGCCAAGA 469 consensus_4356#1 GTTANCAGCACCGAGCCCAGAGGTCCGTACCGACGGCCGGGCGAAGACAGAAGGCCAAGA 361 **** ** ********* ************* * ******* ************* consensus_4356#0 A-GCAAGTTCC---GCCGAACCTTAAAGGATACAGCAAGCGTCTGAAGCTGCAGGAA-GC 524 consensus_4356#1 AAGCAAGGTTCCGGGCGAAGCGTTANAGGATGCAGCAAGCGTCTGAAGCTGCAGGAAAGC 421 * ***** * * ** * * *** ***** ************************* ** consensus_4356#0 GCAACGAAAGCAAAGTACCGACAGCGAGTAAGGTTGCCGTTAGCGGCTACCGCTACTAAA 584 consensus_4356#1 GCAACGGAAAG------------------------------------------------- 432 ****** ** consensus_4356#0 TGCAGATAATGCAGCTCAAGGAAGCGTCACACAAGCACGGGGAGTCAATTATGCCGACTC 644 consensus_4356#1 ------------------------------------------------------------ consensus_4356#0 TGGGCGGGTGATGCCCATGCCCATCTAACGTCTTTAGCCTGTAAGATCAACCCGTACGAG 704 consensus_4356#1 ------------------------------------------------------------ consensus_4356#0 ATAAGGAATAGTTTAGTAAGGTGACATCATCAGGCCGAATAAAGTATTGTTCGAAATCGT 764 consensus_4356#1 ------------------------------------------------------------ consensus_4356#0 CATACACG 772 consensus_4356#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||