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Anopheles gambiae
cluster # 436 cluster # 436       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_436#0 length = 624 sequences # 1  
consensus_436#1 length = 620 sequences # 1  

consensusID : consensus_436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence
                              [TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATTCTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACGACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCAGCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AF457561             [TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATTCTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACGACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCAGCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_436#0 TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCC GATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACA ACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACAC ACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACAC ACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTA GAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATT CTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACG ACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCA GCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGT GGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGT TAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence
                              [GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCCACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAATACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGAAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTGCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAGCTGANAANGGAATGTGTGAN]

[+] EMBL CF541852             [GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCCACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAATACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGAAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTGCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAGCTGANAANGGAATGTGTGAN]


>consensus_436#1 GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCC ACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACA ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC ACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTA TNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAAT ACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGA AGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTG CGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAG CTGANAANGGAATGTGTGAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_436#0      ------------------------------------------------------------
consensus_436#1      GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCC 60
                                                                                 

consensus_436#0      ----TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG 56
consensus_436#1      ACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG 120
                         ********************************************************

consensus_436#0      CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC 116
consensus_436#1      CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC 180
                     ************************************************************

consensus_436#0      AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACA 176
consensus_436#1      AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACA 240
                     ********************************************** *************

consensus_436#0      ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC 236
consensus_436#1      ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC 300
                     ************************************************************

consensus_436#0      ACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATT 296
consensus_436#1      ACACACTCTCCCCCAGCCAGCCCC-GAANAGCCGCCACATGGCATCAAAAATGTAATATT 359
                     ************************ *** ************************* *****

consensus_436#0      ATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAA-- 354
consensus_436#1      ATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAA 419
                     ** ******************************* *********** ********     

consensus_436#0      TACATTCTGAGATGGTTGTGCGCG-ATGTGCGGGAAGGAGAGAGAGAGA-CGTATGAGG- 411
consensus_436#1      TACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNG 479
                     ******** **************  ********** ***********   *******   

consensus_436#0      AGGGGAACGACAGCCGGGTAGAATGGCATTCT-GTATCGGAAAAAAAGTGGTGCGACCGT 470
consensus_436#1      AAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGT 539
                     * *****************************  ***** **    *********** ***

consensus_436#0      GCAAGGGGCAGCGGCGGGAGAGTCAAGATATA-GCAGCATTA-AATGGAACGT-GCCAGA 527
consensus_436#1      GCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGA 599
                     **   ******* *********** * ****   *  * * * * *******  **  **

consensus_436#0      GC-GAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTG 586
consensus_436#1      GCTGANAANGGAATGTGTGAN--------------------------------------- 620
                     ** ** *  * * **  **                                         

consensus_436#0      GCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA 624
consensus_436#1      --------------------------------------
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)