These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATTCTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACGACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCAGCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AF457561 [TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATTATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAATACATTCTGAGATGGTTGTGCGCGATGTGCGGGAAGGAGAGAGAGAGACGTATGAGGAGGGGAACGACAGCCGGGTAGAATGGCATTCTGTATCGGAAAAAAAGTGGTGCGACCGTGCAAGGGGCAGCGGCGGGAGAGTCAAGATATAGCAGCATTAAATGGAACGTGCCAGAGCGAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTGGCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCCACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAATACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGAAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTGCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAGCTGANAANGGAATGTGTGAN] [+] EMBL CF541852 [GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCCACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACGCTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCCAACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACAACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGCACACACTCTCCCCCAGCCAGCCCCGAANAGCCGCCACATGGCATCAAAAATGTAATATTATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAATACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNGAAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGTGCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGAGCTGANAANGGAATGTGTGAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_436#0 ------------------------------------------------------------ consensus_436#1 GCGTTCGCAAGTGGAGAAAGTTGTTTTTAAAATTTAAAACCGCTTCAGATAAGCAATGCC 60 consensus_436#0 ----TCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG 56 consensus_436#1 ACTTTCCTATTGCCATCTCTTTCTCACACACACACTCGCGCGTGCTCTTTCTTTTTCACG 120 ******************************************************** consensus_436#0 CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC 116 consensus_436#1 CTCCGATTGCTTGAAGTTTAGTGAGAAAAGGCTATTGTTTAGCGGAAGCAAAACCTTTCC 180 ************************************************************ consensus_436#0 AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATGTGTGTGAAACACA 176 consensus_436#1 AACAACTTTACTATGACGTTCCGTGGACGCGTGTGTGTGTGTGTATCTGTGTGAAACACA 240 ********************************************** ************* consensus_436#0 ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC 236 consensus_436#1 ACACACAATGAATATCTTCTATACACACACACGCACACACACACACACGCACACACACGC 300 ************************************************************ consensus_436#0 ACACACTCTCCCCCAGCCAGCCCCAGAACAGCCGCCACATGGCATCAAAAATGTTATATT 296 consensus_436#1 ACACACTCTCCCCCAGCCAGCCCC-GAANAGCCGCCACATGGCATCAAAAATGTAATATT 359 ************************ *** ************************* ***** consensus_436#0 ATTAGAATTACCGAATGAATTCATATAGTAATAACACAGCATATTATATATATCAAAA-- 354 consensus_436#1 ATNAGAATTACCGAATGAATTCATATAGTAATAAAACAGCATATTAAATATATCANNNAA 419 ** ******************************* *********** ******** consensus_436#0 TACATTCTGAGATGGTTGTGCGCG-ATGTGCGGGAAGGAGAGAGAGAGA-CGTATGAGG- 411 consensus_436#1 TACATTCTTAGATGGTTGTGCGCNGATGTGCGGGAGGGAGAGAGAGANNACGTATGANNG 479 ******** ************** ********** *********** ******* consensus_436#0 AGGGGAACGACAGCCGGGTAGAATGGCATTCT-GTATCGGAAAAAAAGTGGTGCGACCGT 470 consensus_436#1 AAGGGAACGACAGCCGGGTAGAATGGCATTCNTGTATCAGAGGGGAAGTGGTGCGAGCGT 539 * ***************************** ***** ** *********** *** consensus_436#0 GCAAGGGGCAGCGGCGGGAGAGTCAAGATATA-GCAGCATTA-AATGGAACGT-GCCAGA 527 consensus_436#1 GCGGNGGGCAGCTGCGGGAGAGTCNATATATNCNCTTCNTNATANTGGAACGNTGCTNGA 599 ** ******* *********** * **** * * * * * ******* ** ** consensus_436#0 GC-GAGAGGGAAGTGGATGCGGGTCGCGCCACGAGCGAGAAGGCGGACAGAGGCGAAGTG 586 consensus_436#1 GCTGANAANGGAATGTGTGAN--------------------------------------- 620 ** ** * * * ** ** consensus_436#0 GCCTGCTTGAAGGTTAAAAAAAAAAAAAAAAAAAAAAA 624 consensus_436#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||