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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 687 fasta sequence
[CCGCGTCGGCACAGATCGTCCCGGAGCGGGAAGCAGAACGCACGAACCACCACTATCACCACCATCACCACCACCAACAACCGATCAACCGAAAGGACGAGCGAGCATTACGAAGGTCAACTCTTCAATCAGCTGGCGAGCGTGCGCGCGACGACGAAAGCGGCTGCTGTGTGTTGCACCAGTGCTGTCGCAATTACACCCCGATCGATATAGGGTCGACGCTCCAACACCACCTTCAGCAATCAACAGTGCGGTTGCAGATCCCCCCCCATCTGTATGTCCTGTACCCTCGCTACTCTGCGCAGCTTGACCCGGCGTCTTTCCTTTGTGCGTCTTCCCTGGTGGCACGTGATGGTCCAGCAGTAGTCGTGGACCCGTACCGCTTCTTCGAAATCGGCCCATCGCGCACCTCGTCGTCACCTTCACCTACCGACCTCCCCACCGGGACGTGGTTTTGCAGTGGCCGGCGGGCCCCGAGTGCTTTACTGTTTTTGTTTGTTTTTGTTGCTTTGTTCGTCGCATCCCCGCGTACGTGACGCAATGGTTCGCGTCTAAATTTGCCGGACGCGATGGCTTCCCGTTGCGCGACTGCGTACGAGTGAGTGCGAGCGATCGAGCGAGCGAGCGAGCGATCGAGCGAGCGAGCGAGCGAGAGGCCAATGACCGGTTGCCCCGCCGTCGGGGGTA]
[+] EMBL BM608414 [CCGCGTCGGCACAGATCGTCCCGGAGCGGGAAGCAGAACGCACGAACCACCACTATCACCACCATCACCACCACCAACAACCGATCAACCGAAAGGACGAGCGAGCATTACGAAGGTCAACTCTTCAATCAGCTGGCGAGCGTGCGCGCGACGACGAAAGCGGCTGCTGTGTGTTGCACCAGTGCTGTCGCAATTACACCCCGATCGATATAGGGTCGACGCTCCAACACCACCTTCAGCAATCAACAGTGCGGTTGCAGATCCCCCCCCATCTGTATGTCCTGTACCCTCGCTACTCTGCGCAGCTTGACCCGGCGTCTTTCCTTTGTGCGTCTTCCCTGGTGGCACGTGATGGTCCAGCAGTAGTCGTGGACCCGTACCGCTTCTTCGAAATCGGCCCATCGCGCACCTCGTCGTCACCTTCACCTACCGACCTCCCCACCGGGACGTGGTTTTGCAGTGGCCGGCGGGCCCCGAGTGCTTTACTGTTTTTGTTTGTTTTTGTTGCTTTGTTCGTCGCATCCCCGCGTACGTGACGCAATGGTTCGCGTCTAAATTTGCCGGACGCGATGGCTTCCCGTTGCGCGACTGCGTACGAGTGAGTGCGAGCGATCGAGCGAGCGAGCGAGCGATCGAGCGAGCGAGCGAGCGAGAGGCCAATGACCGGTTGCCCCGCCGTCGGGGGTA]
[+] EMBL BM579257 [CCGCGTCGGCACAGATCGTCCCGGAGCGGGAAGCAGAACGCACGAACCACCACTATCACCACCATCACCACCACCAACAACCGATCAACCGAAAGGACGAGCGAGCATTACGAAGGTCAACTCTTCAATCAGCTGGCGAGCGTGCGCGCGACGACGAAAGCGGCTGCTGTGTGTTGCACCAGTGCTGTCGCAATTACACCCCGATCGATATAGGGTCGACGCTCCAACACCACCTTCAGCAATCAACAGTGCGGTTGCAGATCCCCCCCCATCTGTATGTCCTGTACCCTCGCTACTCTGCGCAGCTTGACCCGGCGTCTTTCCTTTGTGCGTCTTCCCTGGTGGCACGTGATGGTCCAGCAGTAGTCGTGGACCCGTACCGCTTCTTCGAAATCGGGCCATCGCGCACCTCGT ]
consensusID : consensus_4365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[TTCGTCGCATCCCCGCGTACGTGACGCAATGGTTCGCGTCTAAATTTGCCGGACGCGATGGCTTCCCGTTGCGCGACTGCGTACGAGTGAGTGCGAGCGATCGAGCGAGCGAGCGAGCGAGAGGCCAATGACCGGTTGCCCGCCGTCGGGGTAAAGCCGTGCAGAAATCCCGAAGCCCGATACTTCCGCGCGCATTGTTACAGCCCAGAGTACAAACGCGACGATCGCTGCACGCGCACAATTCCCCGCTCTAGAACGGACAGACAGACAGGCAGACCTGGAATGTTGCGGCACGTTGCGTCGATCGGCCTGCTGCTGCTGCTGGTGCTGACCGGCGGCGCCCTCTGCCAGACGCTTTACGAGGGAGATCCGTGCGAGCTGCGCGATGGTTCTGCCGGCGTCTGCACGGATGCGACCGACTGTCCCTGGTTTCTGGAGGTGATCGTGAAGAACCGCCGCTTCGCCGACCGCGTGTCGTGCGGGTTCGACGGCCTGACCGAGGTGATCTGCTGCAAGACGAACGGGACGCGCCCGCTGGGCGTCCGGTCCCGGCTGGCCTGCG]
[+] EMBL BX627293 [TTCGTCGCATCCCCGCGTACGTGACGCAATGGTTCGCGTCTAAATTTGCCGGACGCGATGGCTTCCCGTTGCGCGACTGCGTACGAGTGAGTGCGAGCGATCGAGCGAGCGAGCGAGCGAGAGGCCAATGACCGGTTGCCCGCCGTCGGGGTAAAGCCGTGCAGAAATCCCGAAGCCCGATACTTCCGCGCGCATTGTTACAGCCCAGAGTACAAACGCGACGATCGCTGCACGCGCACAATTCCCCGCTCTAGAACGGACAGACAGACAGGCAGACCTGGAATGTTGCGGCACGTTGCGTCGATCGGCCTGCTGCTGCTGCTGGTGCTGACCGGCGGCGCCCTCTGCCAGACGCTTTACGAGGGAGATCCGTGCGAGCTGCGCGATGGTTCTGCCGGCGTCTGCACGGATGCGACCGACTGTCCCTGGTTTCTGGAGGTGATCGTGAAGAACCGCCGCTTCGCCGACCGCGTGTCGTGCGGGTTCGACGGCCTGACCGAGGTGATCTGCTGCAAGACGAACGGGACGCGCCCGCTGGGCGTCCGGTCCCGGCTGGCCTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4365#0 CCGCGTCGGCACAGATCGTCCCGGAGCGGGAAGCAGAACGCA-CGAACCACCACTATCAC 59
consensus_4365#1 --------------TTCGTCGCATCCCCGCGTACGTGACGCAATGGTTCGCGTCTAAATT 46
***** * * * * ***** * * * ***
consensus_4365#0 CACCAT-CACCACCACCAACAACCGATCAACCGAAAGGACGAGCGAGCATTACGAAGGTC 118
consensus_4365#1 TGCCGGACGCGATGGCTTCCCGTTGCGCGACTGC--GTACGAGTGAGT---------GCG 95
** * * * * * * * ** * * ***** *** *
consensus_4365#0 AACTCTTCAATCAGCTGGCGAGCGTGCGCGCGACGACGAAAGCGGCTGCTGTGTGTTGCA 178
consensus_4365#1 AGCGATCGAGCGAGCGAGCGAGCGAGAGGCCAATGAC-----CGGTTGCCCGCCGTCGGG 150
* * * * *** ******* * * * * *** *** *** ** *
consensus_4365#0 CCAGTGCTGTCGCAATTACACCCCGATCGATATAGGGTCGACGCTCCAACACCACCTTCA 238
consensus_4365#1 GTAAAGCCGT-GCAG--AAATCCCGA--------AGCCCGATACTTCCGCGCGCATTGTT 199
* ** ** *** * * ***** * *** ** * * * *
consensus_4365#0 GCAATCAACAGTGCGGTTGCAGATCCCCCCCCATCTGTATGTCCTGTACCCTCGCTACTC 298
consensus_4365#1 ACAGCCCAGAGTACAAACGCGACGATCGCTGCACGCGCACAATTC---CCCGCTCTAGAA 256
** * * *** * ** * * ** * * *** * ***
consensus_4365#0 TGCGCAGCTTGACCCGGCGTCTTTCCTTTGTGCGTCTTCCCTGGTGGCACGTGATGGTCC 358
consensus_4365#1 CGGACAGACAGACAGGCAGACCTGGAATGTTGCGGCACGTTGCGTCGATCGGCCTGCTGC 316
* *** *** * * * * * **** * ** * ** ** * *
consensus_4365#0 AGCAGTAGTCGTGGACCCGTACCGCTTCTTCGAAATCGGCCCATCGCGCACCTCGTCGTC 418
consensus_4365#1 TGCTGCTGGTGCTGACCGGCGGCGCCCTCTGCCAGACGCTTTACGAGGGAGATCCGTGCG 376
** * * * **** * *** * * ** * * * ** *
consensus_4365#0 ACCTTCACCTACCGACCTCCCCACCGGGACGTGGTTTTGCAGTGGCCGGCGGGCCCCGAG 478
consensus_4365#1 AGCTGCGC-----GATGGTTCTGCCGGCGTCTG-CACGGATGCGACCGACTGTCCCTG-G 429
* ** * * ** * **** ** * * * *** * * *** * *
consensus_4365#0 TGCTTTACTGTTTTTGTTTGTTTTTGTTGCTTTGTTCGTCGCATCCC-CGCGTACGTGAC 537
consensus_4365#1 TTTCTGGAGGTGATCGTGAAGAACCGCCGCTTCGCCGACCGCGTGTCGTGCGGGTTCGAC 489
* * ** * ** * **** * *** * * *** ***
consensus_4365#0 GCAATGGTTCGCGTCTAAATTTGCCGGACG--CGATGGCTTCCCGTTGCGCGACTGCGTA 595
consensus_4365#1 GGCCTGACCGAGGTGATCTGCTGCAAGACGAACGGGACGCGCCCGCTGGGCGTCCG-GTC 548
* ** ** *** **** ** **** ** *** * * **
consensus_4365#0 CGAGTGAGTGCGAGCGATCGAGCGAGCGAGCGAGCGATCGAGCGAGCGAGCGAGCGAGAG 655
consensus_4365#1 CCGGCTGGCCTGCG---------------------------------------------- 562
* * * * *
consensus_4365#0 GCCAATGACCGGTTGCCCCGCCGTCGGGGGTA 687
consensus_4365#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||