These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 854 fasta sequence [CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGCAGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCAAGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGT] [+] EMBL BX619827 [CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGCAGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCAAGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGAT ] [+] EMBL BX612847 [ AGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGC AGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGT] consensusID : consensus_4370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG] [+] EMBL BM594710 [CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4370#0 CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGC 60 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 AGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCA 120 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 AGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCAC 180 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 TATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAAC 240 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 ACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGT-CGAGGGGTGG 299 consensus_4370#1 -----------------------------------CCGCCCACGCGTCCGCGAGGGGTGG 25 * * * ** ********** consensus_4370#0 ATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTG 359 consensus_4370#1 ATATGCA-GCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTG 84 ******* **************************************************** consensus_4370#0 AATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCG 419 consensus_4370#1 AATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCG 144 ************************************************************ consensus_4370#0 GTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTG 479 consensus_4370#1 GTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTG 204 ************************************************************ consensus_4370#0 GTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAA 539 consensus_4370#1 GTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAA 264 ************************************************************ consensus_4370#0 CAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAAC 599 consensus_4370#1 CAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAAC 324 ************************************************************ consensus_4370#0 CTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCA 659 consensus_4370#1 CTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCA 384 ************************************************************ consensus_4370#0 CACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACA 719 consensus_4370#1 CACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACA 444 ************************************************************ consensus_4370#0 ATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTT 779 consensus_4370#1 ATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTT 504 ************************************************************ consensus_4370#0 CGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGC 839 consensus_4370#1 CGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGC 564 ************************************************************ consensus_4370#0 CTCCACTGTCAGCGT--------------------------------------------- 854 consensus_4370#1 CTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGC 624 *************** consensus_4370#0 ---------------------------- consensus_4370#1 TTCTGCTGCAACAAATACACGAGCAGAG 652 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||