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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 854 fasta sequence
[CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGCAGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCAAGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGT]
[+] EMBL BX619827 [CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGCAGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCAAGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGAT ]
[+] EMBL BX612847 [ AGCGCAGCTTGGCGGACATGACGAGCCACTATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAACACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGTCGAGGGGTGGATATGC AGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGT]
consensusID : consensus_4370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG]
[+] EMBL BM594710 [CCGCCCACGCGTCCGCGAGGGGTGGATATGCAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTGAATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCGGTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTGGTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAACAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAACCTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCACACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACAATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTTCGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGCCTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGCTTCTGCTGCAACAAATACACGAGCAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4370#0 CTNGCACGAGGAAACCGTTCACGGGAATGACGCGCTCCGATTTGGAGCAACTGGTGCTGC 60
consensus_4370#1 ------------------------------------------------------------
consensus_4370#0 AGAAGATCAGCGAAGCGCTGGTGTACAAATCGGATAATGCCGCATTGCGAGCGATTATCA 120
consensus_4370#1 ------------------------------------------------------------
consensus_4370#0 AGAAGCAGGCTGTAAAGCTGCAAGGNTTGNGAGCGCAGCTTGGCGGACATGACGAGCCAC 180
consensus_4370#1 ------------------------------------------------------------
consensus_4370#0 TATGAGGCGCTAAAGCTGGTCGCCGATCGAGCGGTAGAGGACATGAAAAAGCGGGCCAAC 240
consensus_4370#1 ------------------------------------------------------------
consensus_4370#0 ACTTACATCGCACCGGTGAAAATTACTCGCGCTGTTGGGCTGCAAGTGT-CGAGGGGTGG 299
consensus_4370#1 -----------------------------------CCGCCCACGCGTCCGCGAGGGGTGG 25
* * * ** **********
consensus_4370#0 ATATGCAAGCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTG 359
consensus_4370#1 ATATGCA-GCGGAGACGGGTCACAAGCCGTCCAGCAGTAGTTCCGGAAAACGGAAGGGTG 84
******* ****************************************************
consensus_4370#0 AATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCG 419
consensus_4370#1 AATCAGCTGCCGTTGCCATGGCAACAGCAGCGGTGAACGGTGTTAGTGAGCATGGTGGCG 144
************************************************************
consensus_4370#0 GTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTG 479
consensus_4370#1 GTATGCGCGAGGTTTCCAGTGAGATGGCGAAAAGACCCGGCCAGCAGGCAGTGATCGGTG 204
************************************************************
consensus_4370#0 GTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAA 539
consensus_4370#1 GTGTGCAGCGTGTCACAGTGCAGCGGCATCATGTACCGAATAATGCACCGCAGATGATAA 264
************************************************************
consensus_4370#0 CAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAAC 599
consensus_4370#1 CAACTCGCACGAGCCCAAACAATTCCACTACGGCGAACGGGGTGGCACGATCATTCAAAC 324
************************************************************
consensus_4370#0 CTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCA 659
consensus_4370#1 CTTATGTTGCGAAGCTTAGCAATACCGTGACAACGGTTGCCACGTTCACGCCACCGGTCA 384
************************************************************
consensus_4370#0 CACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACA 719
consensus_4370#1 CACCGAACAGACTGTCGATCAATGCCGGCGATGGTTCAAACGCAGTACCGGCGCTCAACA 444
************************************************************
consensus_4370#0 ATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTT 779
consensus_4370#1 ATACTCCACCACCCCTTGCCATTACCGCGACAAGCAGTGACTCCGGAACTAATAGCGTTT 504
************************************************************
consensus_4370#0 CGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGC 839
consensus_4370#1 CGCCTGGAGTTGATAGTCCTGTGCGCAAAAAGCAACTGCAGAAAATTACTCCCATGCGGC 564
************************************************************
consensus_4370#0 CTCCACTGTCAGCGT--------------------------------------------- 854
consensus_4370#1 CTCCACTGTCAGCGTACCAGCAGGCGCAGCAAGAGAAACAAGCACGGCAGCAACAGGAGC 624
***************
consensus_4370#0 ----------------------------
consensus_4370#1 TTCTGCTGCAACAAATACACGAGCAGAG 652
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||