These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence [GCCAGAATCCGGCACGNTNG------CGCAGAGCTAAATAGACTGAACTAAGTGGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGGTGGTAGCGGTAGGCAGTGCATACATTACAGGCAACGGGTACAATATCCAGACCAAACACTCATCGCATTACTTTGGCAACGGGGCGAATGCCATCGATTCCTATCAACCGTTGGGCATCGGGTCGGGTTACAGTGAGGCCGGTGTGATTGGTTACAAATCCTCCCAGGATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTA--CAAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATCCGTGACGGAGACGTCGTCAAGGGAGGTTACACGCTATACGATGCTGACGGTACGAAGCGCGTGGTAGAATACTCGTCCGACAAGCACCACGGATTCCAGGCTCACGTCAAGCGAGTGGGCCATGCTTACCACCGCAGGTGTACAAAACGGAACACGGCATTTCGGGCGGTGGCTACGATTGAAGCGGAAGGTTACAAGTTTACAGGAAGTATTAATCAGGAATCTGTAAAGTGGCTGTGTGTCTTAGNTTTACTTCTATACCATAATCGCATTTACAACTAATTCAGGTATCTACTACATCTTGCTTCTTGTGCTAGTGTAACTGGTCGAAAGATTGACCGTNTTCGAATGNCGCNACGATGAA] [+] EMBL BX467152 [GCCAGAATCCGGCACGNTNG CGCAGAGCTAAATAGACTGAACTAAGTGGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGGTGGTAGCGGTAGGCAGTGCATACATTACAGGCAACGGGTACAATATCCAGACCAAACACTCATCGCATTACTTTGGCAACGGGGCGAATGCCATCGATTCCTATCAACCGTTGGGCATCGGGTCGGGTTACAGTGAGGCCGGTGTGATTGGTTACAAATCCTCCCAGGATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTA CAAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATCCGTGACGGAGACGTCGTCAAGGGAGGTTACACGCTATACGATGCTGACGGTACGAAGCGCGTGGTAGAATACTCGTCCGACAAGCACCACGGATTCCAGGCTCACGTCAAGCGAGTGGGCCATGCTTACCACCGCAGGTGTACAAAACGGAACACGGCATTTCGGGCGGTGGCTACGATTGAAGCGGAAGGTTACAAGTTTACAGGAAGTATTAATCAGGAATCTGTAAAGTGGCTGTGTGTCTTAGNTTTACTTCTATACCATAATCGCATTTACAACTAATTCAGGTATCTACTACATCTTGCTTCTTGTGCTAGTGTAACTGGTCGAAAGATTGACCGTNTTCGAATGNCGCNACGATGAA] [+] EMBL BX619162 [ AGAAT CGGCACGAGGGGTTAAACGCAGAGCTAAATAGACTGAANTAAGTGG TAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGGTGGTAGCGGTAGGCAGTGCATACATTACAGGCAACGGGTACAATATCCAGACCAAACACTCATCGCATTACTTTGGCAACGGGGCGAATGCCATCGATTCCTATCAACCGTTGGGCATCGGGTCGGGTTACAGTGAGGCCGGTGTGATTGGTTACAAATCCTCCCAGGATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTAACCAAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATCCGTG ] consensusID : consensus_4371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [CGAGGCAGAATCGCCACGAGGTGTATAACGCAGAGCTAAATAGACTNCAATAAGTNTGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGTGTGGTAGCGGTAGCNGGTGCATACATTACAGCGCACGGGGTACNCAATAGTCCAGACCAAACACTTCATACGCCAGTTACTTTGGGCACACCGCGGGCGAATGCCATCGATTCCTATCAAACCGTTTGGCATCGGGTCGGGGTTACAGGTGAGGCCGGTGTGATTTGGGGTTACAAATCTCGTTCNCCAGGGATAGTTNGGTAACCGGGAAAACTGGGCTAACNAACTACAAG] [+] EMBL BX469148 [CGAGGCAGAATCGCCACGAGGTGTATAACGCAGAGCTAAATAGACTNCAATAAGTNTGTTAAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGTGTGGTAGCGGTAGCNGGTGCATACATTACAGCGCACGGGGTACNCAATAGTCCAGACCAAACACTTCATACGCCAGTTACTTTGGGCACACCGCGGGCGAATGCCATCGATTCCTATCAAACCGTTTGGCATCGGGTCGGGGTTACAGGTGAGGCCGGTGTGATTTGGGGTTACAAATCTCGTTCNCCAGGGATAGTTNGGTAACCGGGAAAACTGGGCTAACNAACTACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4371#0 ---GCCAGAATC----CGGCACGN-TNGCGCAGAGCTAAATAGACTGAACTAAGTG-GTT 51 consensus_4371#1 CGAGGCAGAATCGCCACGAGGTGTATAACGCAGAGCTAAATAGACTNCAATAAGTNTGTT 60 * ******* ** * * ****************** * ***** *** consensus_4371#0 AAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATG-GTGGTA 110 consensus_4371#1 AAGTGTCTTCAACCAAAATGAACGTGATATCGGTGACTTCGGTGGTGCTGATGTGTGGTA 120 ***************************************************** ****** consensus_4371#0 GCGGTAGGCAGTGCATACATTACAGGCAACGGG---TACAATA-TCCAGACCAAACACT- 165 consensus_4371#1 GCGGTAGCNGGTGCATACATTACAGCGCACGGGGTACNCAATAGTCCAGACCAAACACTT 180 ******* *************** ***** ***** *************** consensus_4371#0 CAT-CGC--ATTACTTTGGCAACG----GGGCGAATGCCATCGATTCCTATCAA-CCGTT 217 consensus_4371#1 CATACGCCAGTTACTTTGGGCACACCGCGGGCGAATGCCATCGATTCCTATCAAACCGTT 240 *** *** ********* ** ************************** ***** consensus_4371#0 GGGCATCGGGTCGGG-TTACAG-TGAGGCCGGTGTGATT---GGTTACAAATCCTCCCAG 272 consensus_4371#1 TGGCATCGGGTCGGGGTTACAGGTGAGGCCGGTGTGATTTGGGGTTACAAATCTC----- 295 ************** ****** **************** *********** consensus_4371#0 GATGGTGGCTACCCGGAAAATGGCTACGACTACAGCGATCACTACGCTTACCCGAAGTAC 332 consensus_4371#1 -------GTTCNCCAGGGA-TAGTTN-GGTAACCGGGAAAACTGGGCTAACN--AACTAC 344 * * ** * * * * * * ** * ** *** *** ** ** *** consensus_4371#0 AAGTACGACTACGGTGTGCAGGATGCGCACACCGGGGACCACAAGAGCCAGTGGGAAATC 392 consensus_4371#1 AAG--------------------------------------------------------- 347 *** consensus_4371#0 CGTGACGGAGACGTCGTCAAGGGAGGTTACACGCTATACGATGCTGACGGTACGAAGCGC 452 consensus_4371#1 ------------------------------------------------------------ consensus_4371#0 GTGGTAGAATACTCGTCCGACAAGCACCACGGATTCCAGGCTCACGTCAAGCGAGTGGGC 512 consensus_4371#1 ------------------------------------------------------------ consensus_4371#0 CATGCTTACCACCGCAGGTGTACAAAACGGAACACGGCATTTCGGGCGGTGGCTACGATT 572 consensus_4371#1 ------------------------------------------------------------ consensus_4371#0 GAAGCGGAAGGTTACAAGTTTACAGGAAGTATTAATCAGGAATCTGTAAAGTGGCTGTGT 632 consensus_4371#1 ------------------------------------------------------------ consensus_4371#0 GTCTTAGNTTTACTTCTATACCATAATCGCATTTACAACTAATTCAGGTATCTACTACAT 692 consensus_4371#1 ------------------------------------------------------------ consensus_4371#0 CTTGCTTCTTGTGCTAGTGTAACTGGTCGAAAGATTGACCGTNTTCGAATGNCGCNACGA 752 consensus_4371#1 ------------------------------------------------------------ consensus_4371#0 TGAA 756 consensus_4371#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||