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Anopheles gambiae
cluster # 4372 cluster # 4372       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4372#0 length = 938 sequences # 2  
consensus_4372#1 length = 758 sequences # 1  

consensusID : consensus_4372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 938
fasta sequence
                              [CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTTTCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCCTCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGACTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTCAGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAGCGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA]

[+] EMBL BM596926             [CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTTTCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCCTCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGACTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTCAGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAGCGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTC                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX623925             [                                                                                                                                                                                                                                                              GTATGCCGAGGCTCCGGTAGGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAATGTCACCGCTCCTGGTCGTGGCTGTCCTCAGTCTCGCACAATTTCGCAAGATGACCCTGATGCCGAGGATTGTCTCACGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCATTCGTGGTTGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTAGGATTTCTCTCTACCGGCACCGAAGCTATCCCTGGTAACGCTGCAATGTACGATGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA]


>consensus_4372#0 CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTT TCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCC TCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGGACCGGTGGTAGACATCCAAGGA CTTGGATCAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACCAG TTCTTCAACATCAAGTACGCCGAGGCTCCAGTAGGAGAACAACGCTTCCGTGCTCCTCTC AGTGTACTTCCCTGGTCTGGTGTCATGAATGTCACCGCTCCTGGTCGTGGTTGTCCTCAG CGACGCACTATTTCTCAGGATGACCCTGATGCCGAGGATTGCCTCACGCTTTCCGTATAC TCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACGGAGGTGCTTTTGTA GTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGGACATCGTCCTCGTC GTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTACCGAGGCTATCCCT GGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTATCCCGACACATTCGT AGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTGCCGGAGGACATGCA GTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCAAACGCGCCATCATC CAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTACCGAGGGTGCATAC GAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACATCGATAGCTGCCTT AAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA



consensusID : consensus_4372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence
                              [CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCAAACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACCAACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAATTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGGTTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTTGTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAGTTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTAATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT]

[+] EMBL AL932099             [CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCAAACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACCAACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAATTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGGTTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTTGTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAGTTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTAATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT]


>consensus_4372#1 CAGATCGCCCGAGTTTAACATCCAGTGGTGTAGGTTCTGTCATGGGAACCATGGGAAAGA CGGCCTGNACTGGACGACCCATCTACCAGTTCTTCAACATCAAGTATGCCGAGGCTCCGG TAGTGAGAACAACGCTTCCGTGCTCCTATCAGTGTACTTCCCTGGACGGGTGTCATGAAC TGTCACCGGTCCTGGTCGCTGGCTGTCCTCAGGTCTCGCACAATTTCGCAAGATGACCCT GAATGGCCCGGAGAGGATTTTGGTCGTCACCTGGCCTTTACACCGGTAATTACGTATCCA AACGGGAATACTATAACGNGGCGCAAAATCCGGTACCCCGGTCATGGCTACTACGGTACC AACTGGTGTNATNATGGTTNGGGCGCCATTTACCCGCTTGTGGNNGTCATATGCTGGGAA TTTCCCCTGNGCGGCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGTTGGGGAAGGG TTAATTNTTCTNTGGGCCGTTACCTGCGAATNGGAAAANGGTGGGTGGAAGACCCAACTT GTTACCTAGAGGTGTACCCTCCCTTTTATCCACGGCGTTTGTATCCCGGGTTCCTCCTAG TTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGACAGCTCACATTATG GGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAAACTTA ATTTANTNGTCGACCGTTGTACCGNTATAGCGCTTTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4372#0      CCGCCCACGCGTCCGCATAGTACAAACTCCTCACTGAACAGCTCGACAATACGTACAGTT 60
consensus_4372#1      ------------------------------------------------------------
                                                                                  

consensus_4372#0      TCAAGCATGGGACGTCTTCAGTATTCCTTCGCTGCTTTACTATCCGTGCTTACGATCGCC 120
consensus_4372#1      ------------------------------------------------------------
                                                                                  

consensus_4372#0      TCGATCACTGGCACTTCCCTGGCCCAAGATGATCAGGG-ACCGGTGGTAGACATCCAAGG 179
consensus_4372#1      ---------------------------------CAGATCGCCCGAGTTTAACATCCAGTG 27
                                                       ***    ** * * *  *******  *

consensus_4372#0      ACTTGGAT-CAGTCTTGGGAACCATGGGAGAGACGGCCTGGACTGGACGACCCATCTACC 238
consensus_4372#1      GTGTAGGTTCTGTCATGGGAACCATGGGAAAGACGGCCTGNACTGGACGACCCATCTACC 87
                         * * * * *** ************** ********** *******************

consensus_4372#0      AGTTCTTCAACATCAAGTACGCCGAGGCTCCAGTAG-GAGAACAACGCTTCCGTGCTCCT 297
consensus_4372#1      AGTTCTTCAACATCAAGTATGCCGAGGCTCCGGTAGTGAGAACAACGCTTCCGTGCTCCT 147
                      ******************* *********** **** ***********************

consensus_4372#0      CTCAGTGTACTTCCCTGGTCTGGTGTCATGAA-TGTCACCGCTCCTGGTCG-TGGTTGTC 355
consensus_4372#1      ATCAGTGTACTTCCCTGGACGGGTGTCATGAACTGTCACCGGTCCTGGTCGCTGGCTGTC 207
                       ***************** * *********** ******** ********* *** ****

consensus_4372#0      CTCAG-CGACGCACTATTTCTCAGGATGACCCTGA------TGCCGAGGATT--GCCTCA 406
consensus_4372#1      CTCAGGTCTCGCACAATTTCGCAAGATGACCCTGAATGGCCCGGAGAGGATTTTGGTCGT 267
                      *****    ***** ***** ** ***********       *  *******  *     

consensus_4372#0      CGCTTTCCGTATACTCCAACGATCTTACGGCCAATCGTCCCGTCATGCTCTACGTCCACG 466
consensus_4372#1      CACCTGGCCTTTACACCGGTAATTACGTATCCAAACG----GGAATACTATAACGNGGCG 323
                      * * *  * * *** **    **       **** **    *  ** ** **      **

consensus_4372#0      GAGGTGCTTTTGTAGTCGGATCCGCGGAGCGATTCGGACCTGAGTATTTGCTCGAGAAGG 526
consensus_4372#1      CAAA--ATCCGGTACCCCGGT---CATGGCTACTACGGTACCA--ACTGGTGTNATNATG 376
                       *     *   ***  * * *   *   ** * *  *     *  * * *    *  * *

consensus_4372#0      ACATCGTCCTCGTCGTCATACAGTATCGCTTGGGTACGCTTGGATTTCTCTCTACTGGTA 586
consensus_4372#1      GTTNGGGCGCCATTTACCCGCT-TGTGGNNGTCATATGCTGGGAATTTCCCCTG--NGCG 433
                           * *  * *   *   *  * * *      ** *** *** **  * **    *  

consensus_4372#0      CCGAGGCTATCCCTGGTAACGCTGCCATGTACGACGTGCTCGAGTCGCTTGAATGGGTAT 646
consensus_4372#1      GCGGGAAGTACTCTGGGACTATCCTGAGGGNAANCGT--TGGGGAAGGGTTAATTNTTCT 491
                       ** *     * **** *        * *     ***  * * *  *  * ***   * *

consensus_4372#0      CCCGACACATTCGTAGCTTCGGTGGAAACCCACTAGAAGTAACGATCTTCGGTGAGTCTG 706
consensus_4372#1      NTGGGC-CGTTACCTGC--GAATNGGAAAANGGTGGGTGGAA-GACC--CAACTTGTTAC 545
                         * * * **    **     * * **     * *  * ** ** *  *     **   

consensus_4372#0      CCGGAGGACATGCAGTTTCCGCTATGCTCCATAGCCCCCGTGTTCGCGAGGGACTCTTCA 766
consensus_4372#1      CTAGAGG---TGTACCCTCCCTTTTA-TCCACGGCGTTTGTATCC-CGGGTTCCTCCTAG 600
                      *  ****   ** *   ***  * *  ****  **    ** * * ** *   *** *  

consensus_4372#0      AACGCGCCATCATCCAGTCCGGTACCTTGTTCATGCCCTGGGTCATCTGTCAGGATCCTA 826
consensus_4372#1      TTTATGAAATGCGCACTAGGGGTGTGTCAATTATTACCNNGGGCGAC-----AGCTCACA 655
                           *  **   *      ***   *   * **  **  ** *  *      * **  *

consensus_4372#0      CCGAGGGTGCATACGAGATCGCTCGTATTATCGGTTGTCCCATGACGACTCCTGCCGACA 886
consensus_4372#1      TTATGGGTGNGGAGAGGTTGTATAAAAACCGCTGCCGCCCTTTTAAAAGGNGTGGGNGAA 715
                          *****   *   * *   *   *    * *  * **  * *  *    **     *

consensus_4372#0      TCGATAGCTGCCTTAAGGGCGCTTCAGTGCGGGATCTGGTTCAGGCTCAAGA 938
consensus_4372#1      ACTTAATTTANTNGTCGACCGTTGTACCGNTATAGC-GCTTTAT-------- 758
                       *   *  *       *  ** *  *  *    * * * ** *         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)