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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1260 fasta sequence
[CCGCGGACGCGTGGGTCAGAATTTGATTTGCGGCGGGCAGTACTGCAACCTGGACAGCCTTTCGACTCAGCTTTACATCGCTAGCAAGCAGCCTCAGTCGACGTATCTTGCCCGACCGGCATCGTCCTGGCTGGACGACTACATCGATTGGTCGGCCGCGCCCGGTTGCTGCAAACAGTGGAACAATGGAAGCTTCTGCCCACATCAGAAGAGTGCCTGCGGTGCATGCAACATATCGATGACGGCTCAAAAGCGACCGGTGGAGAGCAGCTTCCGACAGTATGTATCTTTCTTCCTGGAGGACAATCCAGACGAGGCGTGCGCCAAAGCGGGCCACGCCGCGTACGGTAGTGGCGTAAAGTATCGGCCCGATGCGCTGGCCCCGCTGTACAACGACGTGGGCGCCTCCTACTTCATGGCCTATCACACGATCCTGAAGTCGTCCTCCGACTACTACGAAGCGCTGCGCTCGGCGCGCAAAATTTCGGCCAACATTACCAGCACGATACACGCGAACCTGCGGCTGCAGGGCCGCAGCGAGGCCGACATTCAGCAGATCGAGGTGTTCCCGTACTCGGTGTTTTACGTGTTCTACGAGCAGTATCTGACCATGTGGCCCGACACGCTGAAGAGCATGGAGCATCTCGGTGCTGGCCATCTTCATCGTCACGTTCCTGCTGATGGGCTTCGACATCCATTCGTCGCTGGTGGTAGTGATCACGATTACGATGATCGTCATCAACATCGGCGGGCTGATGTACCACTGGAGCATCTCGCTGAATGCGGTCTCGCTCGTGAATCTCGTCATGGCGGTCGGCATCAGTGTCGAGTTTTGCTCCCATCTGGTGCACAGCTTCGCCATGTCGGTGGAGGAGACGCGCGAAAAGCGGGCGGCCGACGCGCTCACCAAGATGGGCAGCTCCGTGTTCTCCGGCATCACGCTCACCAAGTTCGGCGGCATACTGGGTGCTCGGGTTCGCCCACAGCCAAATCCTTCCAGGTGTTCTAACTTCCGGATGTACCTGGGGCATAGTGGCTGTACGGGGCCGCCCACGGGCTCGGGTTTCCTGCCGGTGCTGCTTAGCTTATATCGGCGTGAGCCACCGCCGAAGGCGCTCCAACAACGCTGCCTCCAACGTCCCACACCACCCCAGTGCTAATGAGATCGATGAGGAGCAGAATATGGAACAGGATGCAGCGTACTATGACGACCGACAATCTCCCAACTATCACCACCACCACAGCTACCACGACGACGAC]
[+] EMBL BM575941 [CCGCGGACGCGTGGGTCAGAATTTGATTTGCGGCGGGCAGTACTGCAACCTGGACAGCCTTTCGACTCAGCTTTACATCGCTAGCAAGCAGCCTCAGTCGACGTATCTTGCCCGACCGGCATCGTCCTGGCTGGACGACTACATCGATTGGTCGGCCGCGCCCGGTTGCTGCAAACAGTGGAACAATGGAAGCTTCTGCCCACATCAGAAGAGTGCCTGCGGTGCATGCAACATATCGATGACGGCTCAAAAGCGACCGGTGGAGAGCAGCTTCCGACAGTATGTATCTTTCTTCCTGGAGGACAATCCAGACGAGGCGTGCGCCAAAGCGGGCCACGCCGCGTACGGTAGTGGCGTAAAGTATCGGCCCGATGCGCTGGCCCCGCTGTACAACGACGTGGGCGCCTCCTACTTCATGGCCTATCACACGATCCTGAAGTCGTCCTCCGACTACTACGAAGCGCTGCGCTCGGCGCGCAAAATTTCGGCCAACATTACCAGCACGATACACGCGAACCTGCGGCTGCAGGGCCGCAGCGAGGCCGACATTCAGCAGATCGAGGTGTTCCCGTACTCGGTGTTTTACGTGTTCTACGAGCAGTATCTGACCATGTGGCCCGACACGCTGAAGAGCATGGAGCATCTCGGTGCTGGCCATCTTCATCGTCACGTTCCTGCTGATGGGCTTCGACATCCA ]
[+] EMBL BM588957 [ ccgCTCGGTGTTTTACGTGTTCTACGAGCAGTATCTGACCATGTGGCCCGACACGCTGAAGAGCATGG GCATCTCGGTGCTGGCCATCTTCATCGTCACGTTCCTGCTGATGGGCTTCGACATCCATTCGTCGCTGGTGGTAGTGATCACGATTACGATGATCGTCATCAACATCGGCGGGCTGATGTACCACTGGAGCATCTCGCTGAATGCGGTCTCGCTCGTGAATCTCGTCATGGCGGTCGGCATCAGTGTCGAGTTTTGCTCCCATCTGGTGCACAGCTTCGCCATGTCGGTGGAGGAGACGCGCGAAAAGCGGGCGGCCGACGCGCTCACCAAGATGGGCAGCTCCGTGTTCTCCGGCATCACGCTCACCAAGTTCGGCGGCATACTGGGTGCTCGGGTTCGCCCACAGCCAAATCCTTCCAGGTGTTCTAACTTCCGGATGTACCTGGGGCATAGTGGCTGTACGGGGCCGCCCACGGGCTCGGGTTTCCTGCCGGTGCTGCTTAGCTTATATCGGCGTGAGCCACCGCCGAAGGCGCTCCAACAACGCTGCCTCCAACGTCCCACACCACCCCAGTGCTAATGAGATCGATGAGGAGCAGAATATGGAACAGGATGCAGCGTACTATGACGACCGACAATCTCCCAACTATCACCACCACCACAGCTACCACGACGACGAC]
consensusID : consensus_4378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[CCGGCCATGTCGGTGGAGGAGACGCGCGAAAAGCGGGCGGCCGACGCGCTCACCAAGATGGGCAGCTCCGTGTTCTCCGGCATCACGCTCACCAAGTTCGGCGGCATACTGGTGCTCGGGTTCGCCCACAGCCAAATCTTCCAGGTGTTCTACTTCCGGATGTACCTGGGCATAGTGCTGTACGGGGCCGCCCACGGGCTCGTGTTCCTGCCGGTGCTGCTTAGCTATATCGGCGCCCCTATCAACAAAGTCAAACTGGCCAATCACCGACGGCAGGCGATGCAGGAAACCCAGGAAACGTCCCTCTCGACAACCGCGTGATGCACCGCCGAAGGCGCTCCAACAACGCTGCCTCCAACGTCCCACACCACCCCAGTGCTAATGAGATCGATGAGGAGCAGAATATGGAACAGGATGCAGCGTACTATGACGACCGACAATCTCCCAACTATCACCACCACCACAGCTACCACGACGACGACGACGACGACGACGATACTGA]
[+] EMBL BM647954 [CCGGCCATGTCGGTGGAGGAGACGCGCGAAAAGCGGGCGGCCGACGCGCTCACCAAGATGGGCAGCTCCGTGTTCTCCGGCATCACGCTCACCAAGTTCGGCGGCATACTGGTGCTCGGGTTCGCCCACAGCCAAATCTTCCAGGTGTTCTACTTCCGGATGTACCTGGGCATAGTGCTGTACGGGGCCGCCCACGGGCTCGTGTTCCTGCCGGTGCTGCTTAGCTATATCGGCGCCCCTATCAACAAAGTCAAACTGGCCAATCACCGACGGCAGGCGATGCAGGAAACCCAGGAAACGTCCCTCTCGACAACCGCGTGATGCACCGCCGAAGGCGCTCCAACAACGCTGCCTCCAACGTCCCACACCACCCCAGTGCTAATGAGATCGATGAGGAGCAGAATATGGAACAGGATGCAGCGTACTATGACGACCGACAATCTCCCAACTATCACCACCACCACAGCTACCACGACGACGACGACGACGACGACGATACTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4378#0 CCGCGGACGCGTGGGTCAGAATTTGATTTGCGGCGGGCAGTACTGCAACCTGGACAGCCT 60
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 TTCGACTCAGCTTTACATCGCTAGCAAGCAGCCTCAGTCGACGTATCTTGCCCGACCGGC 120
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 ATCGTCCTGGCTGGACGACTACATCGATTGGTCGGCCGCGCCCGGTTGCTGCAAACAGTG 180
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 GAACAATGGAAGCTTCTGCCCACATCAGAAGAGTGCCTGCGGTGCATGCAACATATCGAT 240
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 GACGGCTCAAAAGCGACCGGTGGAGAGCAGCTTCCGACAGTATGTATCTTTCTTCCTGGA 300
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 GGACAATCCAGACGAGGCGTGCGCCAAAGCGGGCCACGCCGCGTACGGTAGTGGCGTAAA 360
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 GTATCGGCCCGATGCGCTGGCCCCGCTGTACAACGACGTGGGCGCCTCCTACTTCATGGC 420
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 CTATCACACGATCCTGAAGTCGTCCTCCGACTACTACGAAGCGCTGCGCTCGGCGCGCAA 480
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 AATTTCGGCCAACATTACCAGCACGATACACGCGAACCTGCGGCTGCAGGGCCGCAGCGA 540
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 GGCCGACATTCAGCAGATCGAGGTGTTCCCGTACTCGGTGTTTTACGTGTTCTACGAGCA 600
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 GTATCTGACCATGTGGCCCGACACGCTGAAGAGCATGGAGCATCTCGGTGCTGGCCATCT 660
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 TCATCGTCACGTTCCTGCTGATGGGCTTCGACATCCATTCGTCGCTGGTGGTAGTGATCA 720
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 CGATTACGATGATCGTCATCAACATCGGCGGGCTGATGTACCACTGGAGCATCTCGCTGA 780
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 ATGCGGTCTCGCTCGTGAATCTCGTCATGGCGGTCGGCATCAGTGTCGAGTTTTGCTCCC 840
consensus_4378#1 ------------------------------------------------------------
consensus_4378#0 ATCTGGTGCACAGCTTCGCCATGTCGGTGGAGGAGACGCGCGAAAAGCGGGCGGCCGACG 900
consensus_4378#1 --------------CCGGCCATGTCGGTGGAGGAGACGCGCGAAAAGCGGGCGGCCGACG 46
*******************************************
consensus_4378#0 CGCTCACCAAGATGGGCAGCTCCGTGTTCTCCGGCATCACGCTCACCAAGTTCGGCGGCA 960
consensus_4378#1 CGCTCACCAAGATGGGCAGCTCCGTGTTCTCCGGCATCACGCTCACCAAGTTCGGCGGCA 106
************************************************************
consensus_4378#0 TACTGGGTGCTCGGGTTCGCCCACAGCCAAATCCTTCCAGGTGTTCTAACTTCCGGATGT 1020
consensus_4378#1 TACTGG-TGCTCGGGTTCGCCCACAGCCAAATC-TTCCAGGTGTTCTA-CTTCCGGATGT 163
****** ************************** ************** ***********
consensus_4378#0 ACCTGGGGCATAGTGGCTGTACGGGGCCGCCCACGGGCTCGGGTTTCCTGCCGGTGCTGC 1080
consensus_4378#1 ACCTGGG-CATAGTG-CTGTACGGGGCCGCCCACGGGCTCGTGTT-CCTGCCGGTGCTGC 220
******* ******* ************************* *** **************
consensus_4378#0 TTAGCTTATATCGGCG-------------------------------------------- 1096
consensus_4378#1 TTAGCT-ATATCGGCGCCCCTATCAACAAAGTCAAACTGGCCAATCACCGACGGCAGGCG 279
****** *********
consensus_4378#0 ---------------------------------------TGAGCCACCGCCGAAGGCGCT 1117
consensus_4378#1 ATGCAGGAAACCCAGGAAACGTCCCTCTCGACAACCGCGTGATGCACCGCCGAAGGCGCT 339
*** ****************
consensus_4378#0 CCAACAACGCTGCCTCCAACGTCCCACACCACCCCAGTGCTAATGAGATCGATGAGGAGC 1177
consensus_4378#1 CCAACAACGCTGCCTCCAACGTCCCACACCACCCCAGTGCTAATGAGATCGATGAGGAGC 399
************************************************************
consensus_4378#0 AGAATATGGAACAGGATGCAGCGTACTATGACGACCGACAATCTCCCAACTATCACCACC 1237
consensus_4378#1 AGAATATGGAACAGGATGCAGCGTACTATGACGACCGACAATCTCCCAACTATCACCACC 459
************************************************************
consensus_4378#0 ACCACAGCTACCACGACGACGAC-------------------- 1260
consensus_4378#1 ACCACAGCTACCACGACGACGACGACGACGACGACGATACTGA 502
***********************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||