These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence [ATGTTGATCCTAGCTACAAGAAATGAATCGGTTCCAATTTTACGAAAAGCTTTCAAGAACGCTTCCTACTATAATTTGGCAACGTTTCCGTATGAAAAATATTTTAAACAACTTTGGCTTAGTGATGCAAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGCAAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAATGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATACTTGCAACGTGCATCAGAATGGCGCT-AACAATGCCACTTTC-ATACGTTGCGGATGCTGCTGTCGGTTGCTCCTAAGGAGTTGCTCCGAAGCGTACATTTCCGCTTTGGAGGTACCAACAATCCGCAAGGCAATCAATTCGACGAGAAGAATGAAATCAATCTAAAACGGCTCGGGGAAAGGCAGACGATTCTGTTGCTAGAGACGCT] [+] EMBL BX624147 [ATGTTGATCCTAGCTACAAGAAATGAATCGGTTCCAATTTTACGAAAAGCTTTCAAGAACGCTTCCTACTATAATTTGGCAACGTTTCCGTATGAAAAATATTTTAAACAACTTTGGCTTAGTGATGCAAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGCAAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAATGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATACTTGCAACGTGCATCAGAATGGCGCT AACAATGCCACTTTC ATACGTT ] [+] EMBL BX614730 [ AATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGCAAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAATGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATACTTGCAACGTGCATCAGAATGGCGCTAAACAATGCCACTTTCAATACGTTGCGGATGCTGCTGTCGGTTGCTCCTAAGGAGTTGCTCCGAAGCGTACATTTCCGCTTTGGAGGTACCAACAATCCGCAAGGCAATCAATTCGACGAGAAGAATGAAATCAATCTAAAACGGCTCGGGGAAAGGCAGACGATTCTGTTGCTAGAGACGCT] consensusID : consensus_4380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence [CGAGGCAGATCGGCACGNGGGCAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTGGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTACTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTAAAAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGGCAAAAGCATTGCGGATAACGGTGACATTGGACTTTATTNNACCNTGCACCGAATTCTNGACAATTGTCCTTACCAGTTCNGCAACGAAATAACAGGCACCATTTTAATCAAAGGGCTCCCATTAACCCTTTTAAACANACGGCAAAGGNGTCCTTAATTCATTAACCTTTTGGNCAAACGGTTGGCACATTCCAGAAAACTCGGGGCACGGCCTAAAAGCCAAATTGGCCCAACCTTTTCCAAAACTAACGCGTTTCGCCAGAAATTNGCACNTCG] [+] EMBL BX467181 [CGAGGCAGATCGGCACGNGGGCAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTGGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTACTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTAAAAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGGCAAAAGCATTGCGGATAACGGTGACATTGGACTTTATTNNACCNTGCACCGAATTCTNGACAATTGTCCTTACCAGTTCNGCAACGAAATAACAGGCACCATTTTAATCAAAGGGCTCCCATTAACCCTTTTAAACANACGGCAAAGGNGTCCTTAATTCATTAACCTTTTGGNCAAACGGTTGGCACATTCCAGAAAACTCGGGGCACGGCCTAAAAGCCAAATTGGCCCAACCTTTTCCAAAACTAACGCGTTTCGCCAGAAATTNGCACNTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4380#0 ATGTTGATCCTAGCTACAAGAAATGAATCGGTTCCAATTTTACGAAAAGCTTTCAAGAAC 60 consensus_4380#1 ------------------------------------------------------------ consensus_4380#0 GCTTCCTACTATAATTTGGCAACGTTTCCGTATGAAAAATATTTTAAACAACTTTGGCTT 120 consensus_4380#1 --------------------------------------------CGAGGCAGATCGGC-- 14 * * * *** consensus_4380#0 AGTGATGCAAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATT 180 consensus_4380#1 -ACGNGGGCAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATT 73 * * *************************************************** consensus_4380#0 TCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAG 240 consensus_4380#1 TCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAG 133 ************************************************************ consensus_4380#0 CTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGG 300 consensus_4380#1 CTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGG 193 ************************************************************ consensus_4380#0 CATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAAT 360 consensus_4380#1 CATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAAT 253 ************************************************************ consensus_4380#0 ACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATA 420 consensus_4380#1 ACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATA 313 ************************************************************ consensus_4380#0 CAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGC 480 consensus_4380#1 CAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGC 373 ************************************************************ consensus_4380#0 AATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGAT 540 consensus_4380#1 AATAATCCCAAGCAGTACGAGCAGATGGCACATTTGGGATTAATAATGATTCAGCTCGAT 433 *********************************** ************************ consensus_4380#0 GCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAAT 600 consensus_4380#1 GCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTA-CTGGTGCGGAAT 492 ********************************************** ************ consensus_4380#0 TGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGC 660 consensus_4380#1 TGCTTATTAGATGATGTCGATAGAGAAATGTAA--AAACTTTCTTCGGCGCTATTTCTGC 550 ******************************* ************************ consensus_4380#0 GTCTCGCGGGC---AAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAA 717 consensus_4380#1 GTCTCGCGGGGCAAAAGCATTGCGGATAA---CGGTGACATT--------GGACTT---- 595 ********** ** ************ **** ** ** ** consensus_4380#0 TGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATA 777 consensus_4380#1 TATTNNACCNTGCACCGAATTCTNGACAATTGTCCTTACCAGTTCNGCAACGAAATAACA 655 * * ** **** ** * * * * * **** * * *** * * * * consensus_4380#0 CTTGCAACGTGCATCAGAATGGCGCTAACAATGCCACTTTCATACGTTGCGGATGCTGCT 837 consensus_4380#1 GGCACCATTTTAATCA-AAGGGCTCCCATTAACCCTTTTAAACANACGGCAAAGGN---- 710 * * * **** ** *** * * * ** ** * * ** * * consensus_4380#0 GTCGGTTGCTCCTAAGGAGTTGCTCCGAAGCGTACATTTCCGCTTTGGAGGTACCAACAA 897 consensus_4380#1 GTCCTTAATTCATTAACCTTTTGGNCAAACGGTTGGC--ACATTCCAGAAAACTCGGGGC 768 *** * ** * * ** * ** ** * * ** * consensus_4380#0 TCCGCAAGGCAATCAATTCGACGAGAAGAATGAAATCAATCTAAAACGGCTCGGGGAAAG 957 consensus_4380#1 ACGGCCTAAAAGCCAAATTGGCCCAACCTTTTCCA--AAACTAACGCGTTTCGCCAGAAA 826 * ** * *** * * * * * * ** **** ** *** ** consensus_4380#0 GCAGACGATTCTGTTGCTAGAGACGCT 984 consensus_4380#1 TTNG-CACNTCG--------------- 837 * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||