These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence [CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAACAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCACGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACGAACTACAAACAAGCAAACAAAAAAAAAAGCAAGGCAAGGCTAAGCCTAATCCCTTCTCACCCTTCTTAGCATACCCGGCTTAGCGTTGTAACTCTCTCTTATCCTTGTCACACAATCACTACTATATCTAGATATACTCTAGCAGTAAGGGAAGGGAGCTAGCAAGCCAGGGCTAAGGGAGAACAGTACTAGGAGAAACAGAAAAGAAGA] [+] EMBL BM655768 [CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAACAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCACGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACG ] [+] EMBL BM640864 [ ccgGGCCGTGTTTCAACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCACGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGAGAGGGCAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACGAACTACAAACAAGCAAACAAAAAAAAAAGCAAGGCAAGGCTAAGCCTAATCCCTTCTCACCCTTCTTAGCATACCCGGCTTAGCGTTGTAACTCTCTCTTATCCTTGTCACACAATCACTACTATATCTAGATATACTCTAGCAGTAAGGGAAGGGAGCTAGCAAGCCAGGGCTAAGGGAGAACAGTACTAGGAGAAACAGAAAAGAAGA] consensusID : consensus_4382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCGCGGTGGGGCTGCCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCAGACTACAAACTCTACG] [+] EMBL BX627105 [GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGCTGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGCGCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCAACCAGCGGCTCACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCGGTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCGCGGTGGGGCTGCCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGAGAGAGAGTGAGAGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGTTGGCGCCGTCAGCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTTAAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGTGATCGTTTTGTCTTACTAAACTACCAGACTACAAACTCTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4382#0 CCGGTGCGAGCGACGGTTCATGCGTAGCGACCATCTGTCGAAGCACGTCAAACGGCACAA 60 consensus_4382#1 ------------------------------------------------------------ consensus_4382#0 CAAGGACACGAGCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGC 120 consensus_4382#1 -----------GCGGCAAGGTGACGTCATCCGCTGGCCAGTCCGGTGGACGTCGGGCGGC 49 ************************************************* consensus_4382#0 TGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGC 180 consensus_4382#1 TGCGAATGCACCGACGACGACGACGACGACCGCCATCCTTCCGGCGGAGGGTGCGGCTGC 109 ************************************************************ consensus_4382#0 GCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCA 240 consensus_4382#1 GCGAACGGGTGGTGCCGCCCTGTACCACCATCATCATCCACAGCTGGCGGCCGTGTTTCA 169 ************************************************************ consensus_4382#0 ACCAGCGGCTCACCAGTTTGCCACCACCGTACAGCAAGCTTCGGTGTACTAAAGAGCGCG 300 consensus_4382#1 ACCAGCGGCTCACCCGTTTGCCACCACCGTACAGCAAGCCTCGGTGTACTAAAGAGCGCG 229 ************** ************************ ******************** consensus_4382#0 GTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCA 360 consensus_4382#1 GTGACGGCGGTTGAGGAACGCACCTCGGCTCAGCTTACTTGTGTCATATGGACAGTCTCG 289 *********************************************************** consensus_4382#0 CGGTGAGGCTGCCAACCATTCCAGCTGTCTGAGGGGGAGAGGGGAAGGGTCAAAGAATGA 420 consensus_4382#1 CGGTGGGGCTGCCAACCATTCCAGCTATCTGAGGGGAAGAGGGGAAGGGTCAAAGAATGA 349 ***** ******************** ********* *********************** consensus_4382#0 GAGAGAGTGAGAGAGAGA---------------------------GAGGGCAACGTGCGT 453 consensus_4382#1 GAGAGAGTGAGAGAGAGATTGAGCTCAGAGAAAGAGTGAGAGAGAGAGGACAACGTGCGT 409 ****************** **** ********** consensus_4382#0 TGGCGCCGTCAGCGGGACGGGATCCGTTTTATGAATTTTCCTCCTTCTCCAGTTAGGTTT 513 consensus_4382#1 TGGCGCCGTCAGCGGGACGGGATCCGTTTCATGAATTTTCCTCCTTCTCCAGTTAGGTTT 469 ***************************** ****************************** consensus_4382#0 AAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTAGCGCCCCACTATCTGT 573 consensus_4382#1 AAACAATTCTTGCGCGTGTGGGCGTCCCCCGGGAAGCGCCCTTTGCGCCCCACTATCTGT 529 ******************************************* **************** consensus_4382#0 GATCGTTTTGTCTTACTAAACTACCGGACTACAAACTCTACGAACTACAAACAAGCAAAC 633 consensus_4382#1 GATCGTTTTGTCTTACTAAACTACCAGACTACAAACTCTACG------------------ 571 ************************* **************** consensus_4382#0 AAAAAAAAAAGCAAGGCAAGGCTAAGCCTAATCCCTTCTCACCCTTCTTAGCATACCCGG 693 consensus_4382#1 ------------------------------------------------------------ consensus_4382#0 CTTAGCGTTGTAACTCTCTCTTATCCTTGTCACACAATCACTACTATATCTAGATATACT 753 consensus_4382#1 ------------------------------------------------------------ consensus_4382#0 CTAGCAGTAAGGGAAGGGAGCTAGCAAGCCAGGGCTAAGGGAGAACAGTACTAGGAGAAA 813 consensus_4382#1 ------------------------------------------------------------ consensus_4382#0 CAGAAAAGAAGA 825 consensus_4382#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||