|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[TNGGCCCAGAGTTTAGTTTTGGAACACCACTGAGTCAGTGTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAACACAGGATGAATGGTAGTGGAAAAGCTCCCAAACAATCAAACGAAAGTGGGGAACGAATATCACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTATTCTTATTCCCCGTATATATACATATGAATATTTATCTGTACAGACATGTGTTTCTCTTAATGGTATTTCTTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATCAGGCGAGTNTCTGTTGTGCCGGCACCGTGTGGCTCCCTTCTGAATCTTCGCAACTTTAGGTCGACTCTAGCCCTTGCGCACGAAACCGAGAAACCCAACTGAGCAAACCAAGGATTGTAGCTTCCCCGTNNTGACATTGGGCCTNTGCCACGCGCTGTACTACGGACTTCTATACCTCTACGCAACACCACCTCCTTTCACATCACCCGATCTCTCCAATAATCCNCTATCAGTAAATTCAACNAAGTTCACACAAAGAAAGCCCCAGACAGATTCCNCCACCCACCCGCCACCCCNTTCACTCACCCGCACCNNCCCCNNACCNC]
[+] EMBL AL934601 [TNGGCCCAGAGTTTAGTTTTGGAACACCACTGAGTCAGTGTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAACACAGGATGAATGGTAGTGGAAAAGCTCCCAAACAATCAAACGAAAGTGGGGAACGAATATCACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTATTCTTATTCCCCGTATATATACATATGAATATTTATCTGTACAGACATGTGTTTCTCTTAATGGTATTTCTTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATCAGGCGAGTNTCTGTTGTGCCGGCACCGTGTGGCTCCCTTCTGAATCTTCGCAACTTTAGGTCGACTCTAGCCCTTGCGCACGAAACCGAGAAACCCAACTGAGCAAACCAAGGATTGTAGCTTCCCCGTNNTGACATTGGGCCTNTGCCACGCGCTGTACTACGGACTTCTATACCTCTACGCAACACCACCTCCTTTCACATCACCCGATCTCTCCAATAATCCNCTATCAGTAAATTCAACNAAGTTCACACAAAGAAAGCCCCAGACAGATTCCNCCACCCACCCGCCACCCCNTTCACTCACCCGCACCNNCCCCNNACCNC]
consensusID : consensus_4388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 485 fasta sequence
[TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCTTGCG-AGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTAGAACACCACTGAGTCAGGTGCAACAATCTTTACATTAAAGA-GCGACGGACAGAGCGAACACAGG-ATGAATGGTA-GGGAA-AACCTCCCAAACAATCAAACGA--AAGTGAGGA-ACGAATATCACGT-ATAAGTCACAAG-TCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTTTTTTCTTTTCCCCGTATATATACATATGAATATTTATCTGTACAGACACGTGTTACTCTTAATGGTTTTCCTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATAGGCGAGTTTTGTTGTGCCGGCACCGTGTGGCTCCCTTTGAATCTTCGCA]
[+] EMBL BX612945 [TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCTTGCG AGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTAGAACACCACTGAGTCAGGTGCAACAATCTTTACATTAAAGA GCGACGGACAGAGCGAACACAGG ATGAATGGTA GGGAA AACCTCCCAAACAATCAAACGA AAGTGAGGA ACGAATATCACGT ATAAGTCACAAG TCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGTATGTTTGCTTCCGTTTTTTTTTTTCTTTTCCCCGTATATATACATATGAATATTTATCTGTACAGACACGTGTTACTCTTAATGGTTTTCCTTTCTTTTGCAACGATTGACCGGTGTTAAACGGGAGGAAAAGCAATAGGCGAGTTTTGTTGTGCCGGCACCGTGTGGCTCCCTTTGAATCTTCGCA]
[+] EMBL AL931853 [TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCTTGCGCAGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTAGAACACCACTGAGTCAGGTGCAACAATCTTTACATTAAAGACGCGACGGACAGAGCGAACACAGGCATGAATGGTACGGGAANAACCTCCCAAACAATCAAACGANCACGTGAGGANACGAATATCACGTCATAAGTCACAAGCTCGAGAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4388#0 ------------------------------------------------------------
consensus_4388#1 TACTATCAGATCACTATCGGTCAACTTTTGGCAGTTTTTTTCAAAATTTAATTTTACCCT 60
consensus_4388#0 --------------------------------------TNGGCCCAGAGTTT-AGTTTTG 21
consensus_4388#1 TGCGAGATCTTTCTATTCGCTGCTTAAGATGCAGATTATATGTGGATAGTTTTAGTTTTA 120
* * * ***** ******
consensus_4388#0 GAACACCACTGAGTCAGTGTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAAC 81
consensus_4388#1 GAACACCACTGAGTCAG-GTGCAACAATCTTTACATTAAAGAGCGACGGACAGAGCGAAC 179
***************** ******************************************
consensus_4388#0 ACAGGATGAATGGTAGTGGAAAAGCTCCCAAACAATCAAACGAAAGTGGGGAACGAATAT 141
consensus_4388#1 ACAGGATGAATGGTAG-GGAAAACCTCCCAAACAATCAAACGAAAGTGAGGAACGAATAT 238
**************** ****** ************************ ***********
consensus_4388#0 CACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGT 201
consensus_4388#1 CACGTATAAGTCACAAGTCGAGAGAAATCAAATAAGCCGCGTTAAACGTTAAACGGACGT 298
************************************************************
consensus_4388#0 ATGTTTGCTTCCGTTTTTTATTCT-TATTCCCCGTATATATACATATGAATATTTATCTG 260
consensus_4388#1 ATGTTTGCTTCCGTTTTTTTTTTTCTTTTCCCCGTATATATACATATGAATATTTATCTG 358
******************* ** * * *********************************
consensus_4388#0 TACAGACATGTGTTTCTCTTAATGGTATTTCTTTTCTTTTGCAACGATTGACCGGTGTTA 320
consensus_4388#1 TACAGACACGTGTTACTCTTAATGGT-TTTCCTTTCTTTTGCAACGATTGACCGGTGTTA 417
******** ***** *********** **** ****************************
consensus_4388#0 AACGGGAGGAAAAGCAATCAGGCGAGTNTCTGTTGTGCCGGCACCGTGTGGCTCCCTTCT 380
consensus_4388#1 AACGGGAGGAAAAGCAAT-AGGCGAGTTT-TGTTGTGCCGGCACCGTGTGGCTCCCTT-T 474
****************** ******** * **************************** *
consensus_4388#0 GAATCTTCGCAACTTTAGGTCGACTCTAGCCCTTGCGCACGAAACCGAGAAACCCAACTG 440
consensus_4388#1 GAATCTTCGCA------------------------------------------------- 485
***********
consensus_4388#0 AGCAAACCAAGGATTGTAGCTTCCCCGTNNTGACATTGGGCCTNTGCCACGCGCTGTACT 500
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 ACGGACTTCTATACCTCTACGCAACACCACCTCCTTTCACATCACCCGATCTCTCCAATA 560
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 ATCCNCTATCAGTAAATTCAACNAAGTTCACACAAAGAAAGCCCCAGACAGATTCCNCCA 620
consensus_4388#1 ------------------------------------------------------------
consensus_4388#0 CCCACCCGCCACCCCNTTCACTCACCCGCACCNNCCCCNNACCNC 665
consensus_4388#1 ---------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||