These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1078 fasta sequence [TTGAAGATTCAGACAAAGAATGCGAATGGTTTATTAGTGAAACAGTCGAGAGGGAAAAAAGTTTATTAATTGAAAATGTTTTATAAATTGAATTGAAATAGCCGTGGGGTCGAATGGGTTGTTATTGGATGGTTCGAGGCCAAAACGTCGAATCTTGGGAATTGGAATGCAAGCAATAATTTGAATTTCGTATTACTTACATTTTCTTTGAAAATTAAAAAAAAAGGATCTTTGACGTCAAAAGTGTCTGATGTGGGCAGTTTAAAAACCAAACCCTTTACCCTCCTTTGTGATTCTAACTGCCACCCATTCTGAGTATTCAACAGGCTGCAATTAAACGGCACAATACCGGTCGCTCGCTACATTATTCAATCCGCCGTTACAATGCAATCAATCGATACGTCGTGCTCGTCGGACGGCAAC-TCGTCGGCCGCCACAATTTGCTCGCTAAATCCCACCCCCACCAGGTGGGTGGTGTGTCTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCGTGACCGAGA-CGCCCACCTGCACGGGTAAACGCTACACCGGGCAGAATGATTAGATCGAATCCT-GT-TGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCGGCAGCCGCTCGTAATCCTCCATATCATTGATTCGTACCATTTTCATCGCGGTTTTTTTTTTACGTCGGCACAAAAACCTGTTTGCGTTGCTGAAACATGCGCTCCAGCAGGGGTCGGGTGTTGACTTCGGTGTCGGTGCTGAGATAGAAGCTAAAACTTTAACACTGCTCGTAGAACGGAAGTGCCGTAACCTTGTCGATGATGATGCTCGATTGTCGCTGACGTTCGGCGGGCGTTAGCGCGTGCAGCAGCTGCTTGATACGCTGGCGGAGGGCCACTTTAGCGGGATTCGGAATGCGTTGACATGGTGTTTTGTTTTTGTTGGGAGGGTTTGGGTGCGAAATTAGATTTGAAACATTCAAATTTGGGATCGAAGATGAAGGTGATGTTAAAAGCAAAGGTTT] [+] EMBL CNS08FDZ [TTGAAGATTCAGACAAAGAATGCGAATGGTTTATTAGTGAAACAGTCGAGAGGGAAAAAAGTTTATTAATTGAAAATGTTTTATAAATTGAATTGAAATAGCCGTGGGGTCGAATGGGTTGTTATTGGATGGTTCGAGGCCAAAACGTCGAATCTTGGGAATTGGAATGCAAGCAATAATTTGAATTTCGTATTACTTACATTTTCTTTGAAAATTAAAAAAAAAGGATCTTTGACGTCAAAAGTGTCTGATGTGGGCAGTTTAAAAACCAAACCCTTTACCCTCCTTTGTGATTCTAACTGCCACCCATTCTGAGTATTCAACAGGCTGCAATTAAACGGCACAATACCGGTCGCTCGCTACATTATTCAATCCGCCGTTACAATGCAATCAATCGATACGTCGTGCTCGTCGGACGGCAAC TCGTCGGCCGCCACAATTTGCTCGCTAAATCCCACCCCCACCAGGTGGGTGGTGTGTCTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCGTGACCGAGA CGCCCACCTGCACGGGTAAACGCTACACCGGGCAGAATGATTAGATCGAATCCT GT TGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCGGCAGCCGCTCGTAATCCTCCATATCATTGATTCGTACCATTTTCATCGCGGTTTTTTTTTTACGTCGGCACAAAAACCTGTTTGCGTTGCTGAAACATGCGCTCCAGCAGGGGTCGGGTGTTGACTTCGGTGTCGGTGCTGAGATAGAAGCTAAAACTTTAA ] [-] EMBL CNS08FDY [ TCAATCGATACGTCGTGCTCGTCGGACGGCAACTTCGTCGGCCGCCACAATTTGCTCGCTAAATCCCACCCCCACCAGGTGGGTGGTGTG CTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCGTGACCGAGACCGCCCACCTGCACGGGTAAACGCTACACCGGGCAGAATGATTAGATCGAATCCTAGTATGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCGGCAGCCGCTCGTAATCCTCCATATCATTGATTCGTACCATTTTCATCGCGG TCCTGTTGTACGTCGGCACAAAAACCTGTTTGCGTTGCTGAAACATGCGCTCCAGCAGGGGTCGGGTGTTGACTTCGGTGTCGGTGCTGAGATAGACGCTAATCCTTTGACACTGCTCGTAGAACGGAAGTGCCGTAACCTTGTCGATGATGATGCTCGATTGTCGCTGACGTTCGGCGGGCGTTAGCGCGTGCAGCAGCTGCTTGATACGCTGGCGGAGGGCCACTTTAGCGGGATTCGGAATGCGTTGACATGGTGTTTTGTTTTTGTTGGGAGGGTTTGGGTGCGAAATTAGATTTGAAACATTCAAATTTGGGATCGAAGATGAAGGTGATGTTAAAAGCAAAGGTTT] consensusID : consensus_4393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [GTCGTGCTCGTCGGTACGGCAACTCGTCGGCCGCCACANATTTGCTCGCTNAAATCCGACCCCCACCAGNTGGCTCGGTGTGCTGCGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCCGTGACCCGAGACGCCCACCTGTCACGGGTAAACGCTACACCCGGGCAGAATGATTAGATCGAGTCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCAGGTACCCGCTCGTAATCCTCCATATCACTTGATTCGTACCATTGTTCATCGCGGTTCTGTTGTACGTCGGCAACAAAAACACTGTTTGCGTTGCTGAAACATGCGCTCCAGCCAGGGCCCCGGGTGTTGACCTTCGGTGTCGGTGCTGAGATAGACGCTAATCCTTGACACTGCTCGTAGACGCCTAATGCCNAGTCTGCCTC] [-] EMBL BX469078 [GTCGTGCTCGTCGGTACGGCAACTCGTCGGCCGCCACANATTTGCTCGCTNAAATCCGACCCCCACCAGNTGGCTCGGTGTGCTGCGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATCCACCACCCGTGACCCGAGACGCCCACCTGTCACGGGTAAACGCTACACCCGGGCAGAATGATTAGATCGAGTCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGCTTGATATTCCACGTGGTCGTCAGGTACCCGCTCGTAATCCTCCATATCACTTGATTCGTACCATTGTTCATCGCGGTTCTGTTGTACGTCGGCAACAAAAACACTGTTTGCGTTGCTGAAACATGCGCTCCAGCCAGGGCCCCGGGTGTTGACCTTCGGTGTCGGTGCTGAGATAGACGCTAATCCTTGACACTGCTCGTAGACGCCTAATGCCNAGTCTGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4393#0 TTGAAGATTCAGACAAAGAATGCGAATGGTTTATTAGTGAAACAGTCGAGAGGGAAAAAA 60 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 GTTTATTAATTGAAAATGTTTTATAAATTGAATTGAAATAGCCGTGGGGTCGAATGGGTT 120 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 GTTATTGGATGGTTCGAGGCCAAAACGTCGAATCTTGGGAATTGGAATGCAAGCAATAAT 180 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 TTGAATTTCGTATTACTTACATTTTCTTTGAAAATTAAAAAAAAAGGATCTTTGACGTCA 240 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 AAAGTGTCTGATGTGGGCAGTTTAAAAACCAAACCCTTTACCCTCCTTTGTGATTCTAAC 300 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 TGCCACCCATTCTGAGTATTCAACAGGCTGCAATTAAACGGCACAATACCGGTCGCTCGC 360 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 TACATTATTCAATCCGCCGTTACAATGCAATCAATCGATACGTCGTGCTCGTCGG-ACGG 419 consensus_4393#1 -----------------------------------------GTCGTGCTCGTCGGTACGG 19 ************** **** consensus_4393#0 CAACTCGTCGGCCGCCACAA-TTTGCTCGCTAAA-TCCCACCCCCACCAGGTGGGT-GGT 476 consensus_4393#1 CAACTCGTCGGCCGCCACANATTTGCTCGCTNAAATCCGACCCCCACCAGNTGGCTCGGT 79 ******************* ********** ** *** *********** *** * *** consensus_4393#0 GTGTCTGCGGGCCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATC 536 consensus_4393#1 GTG-CTGCGG-CCGTTGGGATGTTTGCCAAAGTACTCGTGCAAAAATCGATCATAATATC 137 *** ****** ************************************************* consensus_4393#0 CACCACC-GTGACC-GAGACGCCCACCTG-CACGGGTAAACGCTACACC-GGGCAGAATG 592 consensus_4393#1 CACCACCCGTGACCCGAGACGCCCACCTGTCACGGGTAAACGCTACACCCGGGCAGAATG 197 ******* ****** ************** ******************* ********** consensus_4393#0 ATTAGATCGAATCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGC 652 consensus_4393#1 ATTAGATCGAGTCCTGTTGTGAGACCATCTTCGCGCGTTACATCGTCGAAGGCGGGCTGC 257 ********** ************************************************* consensus_4393#0 TTGATATTCCACGTGGTCGTC-GGCAGCCGCTCGTAATCCTCCATATCA-TTGATTCGTA 710 consensus_4393#1 TTGATATTCCACGTGGTCGTCAGGTACCCGCTCGTAATCCTCCATATCACTTGATTCGTA 317 ********************* ** * ********************** ********** consensus_4393#0 CCATT-TTCATCGCGGTTTTTTTTTTACGTCGGCA-CAAAAAC-CTGTTTGCGTTGCTGA 767 consensus_4393#1 CCATTGTTCATCGCGGTTCTGTTGT-ACGTCGGCAACAAAAACACTGTTTGCGTTGCTGA 376 ***** ************ * ** * ********* ******* **************** consensus_4393#0 AACATGCGCTCCAGCAGGGGTC--GGGTGTTGAC-TTCGGTGTCGGTGCTGAGATAGAAG 824 consensus_4393#1 AACATGCGCTCCAGCCAGGGCCCCGGGTGTTGACCTTCGGTGTCGGTGCTGAGATAGACG 436 *************** *** * ********** *********************** * consensus_4393#0 CTAAAACTTTAACACTGCTCGTAGAACGGAAGTGCCGTAACCTTGTCGATGATGATGCTC 884 consensus_4393#1 CTAAT-CCTTGACACTGCTCGTAGACGCCTAATGCCNAGTCTGCCTC------------- 482 **** * ** ************** * **** * ** consensus_4393#0 GATTGTCGCTGACGTTCGGCGGGCGTTAGCGCGTGCAGCAGCTGCTTGATACGCTGGCGG 944 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 AGGGCCACTTTAGCGGGATTCGGAATGCGTTGACATGGTGTTTTGTTTTTGTTGGGAGGG 1004 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 TTTGGGTGCGAAATTAGATTTGAAACATTCAAATTTGGGATCGAAGATGAAGGTGATGTT 1064 consensus_4393#1 ------------------------------------------------------------ consensus_4393#0 AAAAGCAAAGGTTT 1078 consensus_4393#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||