These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [TAACGAGAATGGGCTTTAGGAACGTGCAGTAATCGTGCAGAATGGTGGCAAACAATTGGATGGATCTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCTTTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTCTACCAGGTGCNGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGATTTCGTGTCTAGTTTTAAT] [+] EMBL BX620297 [TAACGAGAATGGGCTTTAGGAACGTGCAGTAATCGTGCAGAATGGTGGCAAACAATTGGATGGATCTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCTTTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTCTACCAGGTGCNGATGTGTGT ] [+] EMBL BM632008 [ ccGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCTTTTATGTACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATTGTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTTCCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGTATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTCTACGAGGTGCGGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGATTTCGTGTCTAGTTTTAAT] consensusID : consensus_4405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTTTACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTCGAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTTGTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGATCTTTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACTAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGAATATTTACATGATTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC] [+] EMBL BM596226 [CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTTTACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTCGAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTTGTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGATCTTTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTCAAACAGGTCAAACTAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATACACACCATGAATATTTACATGATTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCTCTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4405#0 ------------------------------------------------------------ consensus_4405#1 CCGCCCACGCGTCCGAACAACCACCGAGGTGCAAGAGCGAACCCGTCGAGAGACCATTTT 60 consensus_4405#0 ------------------------------------------------------------ consensus_4405#1 TACCATGGGAAAAAGGACGTTTGGTGCATAAACGCAACAAACGTTGGTTGTTATTATTTC 120 consensus_4405#0 ----------------------------------TAACGAGAATGGGCTTTAGGAACGTG 26 consensus_4405#1 GAATAGAAGCGAACAGAGGAGAAGGAGAAAGTGCTAACGAGAATGGGTTTTAGGAACGTT 180 ************* *********** consensus_4405#0 CAGTAATCGTGCAGAATGGTGGCAAACAATTG---------------------GATGGAT 65 consensus_4405#1 --GTAATCGTGCAGAATGGTGGCAAACTATTCAATACAGGCTCAATGTTGGGTGATGGAT 238 ************************* *** ******* consensus_4405#0 CTTTCTCCTTTGTCCCCTTCCCTGCTACTAAAAAGCAAAACATTTTAAGTCAACGAATTC 125 consensus_4405#1 CTTTCTCCTTTACCCCCTTCCCTGCTGCTAAAAAGCAAAACATTTTAAGTCAACGAATTC 298 *********** ************* ********************************* consensus_4405#0 AAACAGGTCAAACCAAACAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATA 185 consensus_4405#1 AAACAGGTCAAACTAA-CAAACAACGGCACGGATGTTGATGAATGTTGTACATATTTATA 357 ************* ** ******************************************* consensus_4405#0 CACACCATGTATATTTACATGAGTTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCT 245 consensus_4405#1 CACACCATGAATATTTACATGA-TTTTTGTTTTTTGGGAAGTGATGATATAAAGTATTCT 416 ********* ************ ************************************* consensus_4405#0 CTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGTTAGGAGACACTGAATTCCCT 305 consensus_4405#1 CTTATGCGTTAGTGAGTGCGAGAAGCTTGGTTTTCTCGGGTAGGAGACACTGAATTCC-- 474 *************************************** ****************** consensus_4405#0 TTTATGNACCATACCCTTACACCATTTCGGACCAGCTCTGTGACGTGAATCCAAATTATT 365 consensus_4405#1 ------------------------------------------------------------ consensus_4405#0 GTTGTGCTATAGAGTTGGTAAACCTATTGGCGTGTGCGTCGTCGGGGGAGCGTTTTCTTT 425 consensus_4405#1 ------------------------------------------------------------ consensus_4405#0 CCAAAAAGTGGAGTGGTCCAACGAAGACGCTTGATTACACACTGACACACACACATATGT 485 consensus_4405#1 ------------------------------------------------------------ consensus_4405#0 ATAGGATTAGCAAACTGTTTCCGTTGTAGGCTAGGGTATAATTTGGAATAGGAAAAGCTC 545 consensus_4405#1 ------------------------------------------------------------ consensus_4405#0 TACCAGGTGCNGATGTGTGTGTGTGTTTTGTGTGCAAAAGGTAAGGAGAAGAGATTTCGT 605 consensus_4405#1 ------------------------------------------------------------ consensus_4405#0 GTCTAGTTTTAAT 618 consensus_4405#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||