These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTTTAGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAAACAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAGAGAAACGTTCACGCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAACGAAAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGCTGGTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAATCGGAAGGGAGATTGTACATTTANCAGAGAGATAGAGAGGACAACCGNAAGAGAGAGAGAGAGTAAGAGCTNGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGACAATGCAAGCATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATGTTGTGTTATAATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACACACACGTAGANCGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNATTGGTTTAACACGGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGCACCCTGNGGTGCAACAGCACGAGCCCCACGNGAGACNGC] [+] EMBL AL931043 [TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTTTAGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAAACAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAGAGAAACGTTCACGCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAACGAAAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGCTGGTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAATCGGAAGGGAGATTGTACATTTANCAGAGAGATAGAGAGGACAACCGNAAGAGAGAGAGAGAGTAAGAGCTNGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGACAATGCAAGCATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATGTTGTGTTATAATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACACACACGTAGANCGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNATTGGTTTAACACGGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGCACCCTGNGGTGCAACAGCACGAGCCCCACGNGAGACNGC] consensusID : consensus_4406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAGCATACGGATTTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAGGACACTAAAATAGCTTCGTGCACATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAGAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGGCAAGCGATCAAAACGAAAGAAAGAACAGAACAGAAATAAACTCAAACAAAAACATACACACATACACAAACAAAGGATGCAACACAACAAATGCAAAGGAAACAGGAGTAACAGGAGAAGCAAACAAACAAGCAGTGC] [+] EMBL BX619033 [AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAGCATACGGATTTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAGGACACTAAAATAGCTTCGTGCACATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAGAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGGCAAGCGATCAAAACGAAAGAAAGAACAGAACAGAAATAAACTCAAACAAAAACATACACACATACACAAACAAAGGATGCAACACAACAAATGCAAAGGAAACAGGAGTAACAGGAGAAGCAAACAAACAAGCAGTGC] consensusID : consensus_4406#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [AATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAAACAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGAGAGAGAGATAGAGAGGACAACCGAAAGAGAGAGAGAGAGTAAGAGCTAGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGAAATGCAAGCATGAAGAAATATTGAAAACAATTAAGAAAAAAAAAAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGTTACATAAATTATAAAAAAAACTAACTTACAAAC] [+] EMBL BX609618 [AATGCCACTAACTTACTGACCACATTTCCCTCGAAGACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGCATACTAATAACAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAAACATGCAAAACAGCGAAAGGTCATGCATCAAATCCGAAGAAGAGTTTAAACAATCCACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAAGAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGAGAGAGAGATAGAGAGGACAACCGAAAGAGAGAGAGAGAGTAAGAGCTAGAATGTATGCGTGTGTGTGGATGTGGTTGTACGAGTGAGGAAATGCAAGCATGAAGAAATATTGAAAACAATTAAGAAAAAAAAAAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGTTACATAAATTATAAAAAAAACTAACTTACAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4406#1 AGGGAGAGAGAGAGAGTCAAACGCATCCTAAAAAATCACACGTACACACCGCGTGTTAAG 60 consensus_4406#2 ------------------------------------------------------------ consensus_4406#0 -TNGCCGAGTTATGCGTCTTTTTCACTGTGTACGACTCATTGTGTAAACGTGTAATCGTT 59 consensus_4406#1 CATACGGAT--TTAACGAGCGCAGCAGCAAAACAAAACCAAAAAAAG----GACACTAAA 114 consensus_4406#2 ------------------------------------------------------------ consensus_4406#0 TAGTCGATTCGTTACTGTGTTCTACAGGTTTGGTTTTCTTTCTAAAGCTTCGGCGGTGAA 119 consensus_4406#1 ATAGCTTCGTGCAC---ATTTATAAATGCCACTAACTTACTGACCACATTTCCCTCGAAG 171 consensus_4406#2 ------------------------AATGCCACTAACTTACTGACCACATTTCCCTCGAAG 36 consensus_4406#0 ACAAGAACGCGCAAGAAATTTTCAAATTTCCCCTTTTTTGGAATCGCGTTTGTAGTAAAG 179 *** * * ** * * * *** *** consensus_4406#1 ACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGC--ATAC 229 consensus_4406#2 ACAGGCAAGCAGAGCGCGGGGCAGACGGAGGCTACACTTATCTATAATAAAAGC--ATAC 94 consensus_4406#0 AGAAACGTTCAC-GCCTAGACTCGTTTGAGATGATGTTTAAGTTTGGTGAAAAACGAAAC 238 * * * ** ** * * *** * *** * * * *** * ** consensus_4406#1 TAATAA-CAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAA-ACA 287 consensus_4406#2 TAATAA-CAACAGAACAACACAGAGCAAGCAAGCAAGCAAGCAAGGAAAAAAACAA-ACA 152 consensus_4406#0 GAAAAAGCGGTAGAAAACGGCAGAAAGTGCGAACGGTTAGAGGAGCGTAATGGTGATAGC 298 ** ** * **** * **** ** * * * ** ** * * consensus_4406#1 TGCAAG--AGCGAAAGG-------TCATGCA-TCAAATCCGAAGAAGAGTTTAAACAATC 337 consensus_4406#2 TGCAAAACAGCGAAAGG-------TCATGCA-TCAAATCCGAAGAAGAGTTTAAACAATC 204 consensus_4406#0 TGGTAAAAAGCGGAAGGGATACGATCAAACAATCGAGTTCTAACGAGAATTGCACGAAAT 358 ** * **** **** *** ** ** * * * ** *** ** * ** consensus_4406#1 CACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAA 397 consensus_4406#2 CACGTGTCGACGAGCACACGTGTCAAACAAGCAATCCAAAGTACGGTTTGCGCGGGAAAA 264 consensus_4406#0 CGGAAGGGAGATTGTACATTTANCAGAGAGATAG---AGAGGACAAC---CGNAAGAGA- 411 * * * *** * ** * * * * ** ** ** ** * consensus_4406#1 GAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGACAGAGATCCAAAACCGAAGG 457 consensus_4406#2 GAGAGCGAGCAAGTGATCGATTGGTCAAGAGAGCAAGGGAGAGAGAGATAGA---GAGGA 321 consensus_4406#0 GAGAGAGAGTAAGAGCTNGAATGTATGCGTGTGTGTGG-ATGTGGTTGTACGAGTGAGGA 470 ***** *** *** * * ** ** * * * ** * * * ** * consensus_4406#1 CAA-GCGATCAAAACGAAAGAAAGAAC-AGAACAGAAATAAACTCAAACAAAAACATACA 515 consensus_4406#2 CAA-CCGAAAGAGA-GAGAGAGAGTA--AGAGCTAGAATGTATGCGTGTGTGTGGATGTG 377 consensus_4406#0 CAATGCAAGCATGAAGAAATATTGAAACACAATTACGACACAACAACGTAATTCCTAATG 530 *** * * * ** * * * * * * * * consensus_4406#1 CACATACACAAACAAAGGATGCAACACAACAAATGCAAAGGAAACAGG-AGTAACAGGAG 574 consensus_4406#2 GTTGTACG-AGTGAGGAAATGCAAGCATGAAGAAATATTGAAAACAATTAAGAAAAAAAA 436 consensus_4406#0 TTGTGTTATAATCAAAAAATAANCTGTTACATACATTATAACCACAATAACTAACAACAC 590 * * ** * * *** * ** * * consensus_4406#1 AAGCAAACAAACAAGCAGTGC--------------------------------------- 595 consensus_4406#2 AAGTAATTCCTAATGTTGTTTGTTATAATCAAAAAATAAACTGTTACATAAATTATAAAA 496 consensus_4406#0 ACACGTA-GANCGGATTCTGGACCAACCACGGACAATGTTANAGNGTCTNGAACNCCNAT 649 * * consensus_4406#1 ------------------------------------------------------------ consensus_4406#2 AAAACTAACTTACAAAC------------------------------------------- 513 consensus_4406#0 TGGTTTAACACGGCACGAAGANGAAGCACNCAGCGGNCGACGANCAANCCATACGCACGC 709 consensus_4406#1 --------------------------------------- consensus_4406#2 --------------------------------------- consensus_4406#0 ACCCTGNGGTGCAACAGCACGAGCCCCACGNGAGACNGC 748 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||