cluster # 4409

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Anopheles gambiae
cluster # 4409 cluster # 4409 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4409#0 length = 782 sequences # 1

consensus_4409#1 length = 663 sequences # 2

consensusID : consensus_4409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence

                              [AATCGCGCTACATGTAATAACAGCATTTAGAGTGCTGAAGTTGTTCTTCCTCCCTCGAACCCACTACTACCCGCCCATCCCCCCACCTCCCCCCTTGTCCACAGTTGTCAAGCAGCTGTTTAGAGCTTGCATTGTACAAACGAATAGTATGATAAGCACCAGAAAGAACCAATTTCATAGTGTGTGTGGTGTGTCAAACACGCAAATAGTAATGCGTTATCCATCGTCCCTATATTCAATATGGTACAGTATTTTATTCGAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACAGAATACACAGTATTGCCCCCGGCTAGTTTGTTAGATTGAGATTGAGTTTATTGCAGCTGAATGGTATTCCTTACTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCAAAAAAACACAATACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGACAAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGTTACAGAGAGGAAAGCAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGTATCAACAAAGCAAAACGAAAACAAGTGTATTTGTCCACCCCACGCCACCCCCACAACAGAAAGGCCTGAATTGTTAATGAAAGCAAATATTATTACGGTAAACGATGACGAACCCTCCCCCCTTTAAAAAANGAAAGGNGTTTCGAGTTTTACAATCATATCCTCTG]

[+] EMBL BX625014             [AATCGCGCTACATGTAATAACAGCATTTAGAGTGCTGAAGTTGTTCTTCCTCCCTCGAACCCACTACTACCCGCCCATCCCCCCACCTCCCCCCTTGTCCACAGTTGTCAAGCAGCTGTTTAGAGCTTGCATTGTACAAACGAATAGTATGATAAGCACCAGAAAGAACCAATTTCATAGTGTGTGTGGTGTGTCAAACACGCAAATAGTAATGCGTTATCCATCGTCCCTATATTCAATATGGTACAGTATTTTATTCGAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACAGAATACACAGTATTGCCCCCGGCTAGTTTGTTAGATTGAGATTGAGTTTATTGCAGCTGAATGGTATTCCTTACTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCAAAAAAACACAATACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGACAAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGTTACAGAGAGGAAAGCAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGTATCAACAAAGCAAAACGAAAACAAGTGTATTTGTCCACCCCACGCCACCCCCACAACAGAAAGGCCTGAATTGTTAATGAAAGCAAATATTATTACGGTAAACGATGACGAACCCTCCCCCCTTTAAAAAANGAAAGGNGTTTCGAGTTTTACAATCATATCCTCTG]




>consensus_4409#0
AATCGCGCTACATGTAATAACAGCATTTAGAGTGCTGAAGTTGTTCTTCCTCCCTCGAAC
CCACTACTACCCGCCCATCCCCCCACCTCCCCCCTTGTCCACAGTTGTCAAGCAGCTGTT
TAGAGCTTGCATTGTACAAACGAATAGTATGATAAGCACCAGAAAGAACCAATTTCATAG
TGTGTGTGGTGTGTCAAACACGCAAATAGTAATGCGTTATCCATCGTCCCTATATTCAAT
ATGGTACAGTATTTTATTCGAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATA
AAACAGAATACACAGTATTGCCCCCGGCTAGTTTGTTAGATTGAGATTGAGTTTATTGCA
GCTGAATGGTATTCCTTACTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATA
ATCTCGATTGCAAAAAAACACAATACATACACGTGCTACTGGTGATAAGCGAATGGATTT
GTTATGGATTCCGACAAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTG
TTACAGAGAGGAAAGCAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACG
GTGGAAAGCAAACGTATCAACAAAGCAAAACGAAAACAAGTGTATTTGTCCACCCCACGC
CACCCCCACAACAGAAAGGCCTGAATTGTTAATGAAAGCAAATATTATTACGGTAAACGA
TGACGAACCCTCCCCCCTTTAAAAAANGAAAGGNGTTTCGAGTTTTACAATCATATCCTC
TG

consensusID : consensus_4409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence

                              [CAATCGCCCGAGGNNTATGCAACATTGNGTTTAACTATCTTATTTTAACCAACAGTCCTGTCAGACTTTAACTTTATATCGTACATTGTCTGGCTTTAATCTAATCGTACATTGGCATCTGAATTCGTTCTAAACTTCGCATAAACAACCAACCCCAGTGTGTGCTCGCTTAGTTTGCAAGAGCATTTAGTTGGGAGAAAATACAGAACAGTGCTAAGAGCTAGTAGCATTATTCTGTTTCAGGACAATCGACGTTCCCTCCTCGTCCCTATATTCAATATGGTACAGTATTTCATTCGAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACATAACTTCACAGTATTGCCCCCGGCTAGTTTGTNAGATTGAGATTGAGTTTATTGCAGCGGAATGGTATTCCTTACTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCACTTGACAAGAACAAAACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGACAAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGCTACAGAGAGGAAAGCAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGTATCAA]

[+] EMBL AL933765             [CAATCGCCCGAGGNNTATGCAACATTGNGTTTAACTATCTTATTTTAACCAACAGTCCTGTCAGACTTTAACTTTATATCGTACATTGTCTGGCTTTAATCTAATCGTACATTGGCATCTGAATTCGTTCTAAACTTCGCATAAACAACCAACCCCAGTGTGTGCTCGCTTAGTTTGCAAGAGCATTTAGTTGGGAGAAAATACAGAACAGTGCTAAGAGCTAGTAGCATTATTCTGTTTCAGGACAATCGACGTTCCCTCCTCGTCCCTATATTCAATATGGTACAGTATTTCATTCGAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACATAACTTCACAGTATTGCCCCCGGCTAGTTTGTNAGATTGAGATTGAGTTTATTGCAGCGGAATGGTATTCCTTACTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCACTTGACAAGAACAAAACA                                                                                                                                                                             ]
[+] EMBL BX616338             [                                                                                                                                                                                                            AGAACAGTGCTAAGAG TAGTAGCATTATT TGTTTCAGGACAATCGACGTTCCCTCCTCGTCCCTATATTCAATATGGTACAGTATTTTATTCGAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACAGAA TACACAGTATTGCCCCCGGCTAGTTTGTTAGATTGAGATTGAGTTTATTGCAGCTGAATGGTATTCCTTACTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCA   AAAAAACACAATACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGACAAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGCTACAGAGAGGAAAGCAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGTATCAA]




>consensus_4409#1
CAATCGCCCGAGGNNTATGCAACATTGNGTTTAACTATCTTATTTTAACCAACAGTCCTG
TCAGACTTTAACTTTATATCGTACATTGTCTGGCTTTAATCTAATCGTACATTGGCATCT
GAATTCGTTCTAAACTTCGCATAAACAACCAACCCCAGTGTGTGCTCGCTTAGTTTGCAA
GAGCATTTAGTTGGGAGAAAATACAGAACAGTGCTAAGAGCTAGTAGCATTATTCTGTTT
CAGGACAATCGACGTTCCCTCCTCGTCCCTATATTCAATATGGTACAGTATTTCATTCGA
GCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACATAACTTCACAGTATTG
CCCCCGGCTAGTTTGTNAGATTGAGATTGAGTTTATTGCAGCGGAATGGTATTCCTTACT
GCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCACTTGACAA
GAACAAAACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGACAA
GATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGCTACAGAGAGGAAAGCA
ATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGTAT
CAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4409#0      --------------------------------AATCGCGCTACATGTAATAACAGCATTT 28
consensus_4409#1      CAATCGCCCGAGGNNTATGCAACATTGNGTTTAACTATCTTATTTTAACCAACAGTCCTG 60
                                                      **      **  *  *  *****   * 

consensus_4409#0      AGAGTGCTGAAGTT------GTTCTTCCTCC--CTCGAACCCACTACTACCCGCCCATCC 80
consensus_4409#1      TCAGACTTTAACTTTATATCGTACATTGTCTGGCTTTAATCTAATCGTACATTGGCATCT 120
                        **   * ** **      ** * *  **   **  ** * * *  ***     **** 

consensus_4409#0      CCCCACCTCCCCCCTTGTCCACAGTTGTCAAGCAGCTGTTTAGAGCTTGCATTGTACAAA 140
consensus_4409#1      GAATTCGTTCTAAACTTCGCATAAACAACCAACCCCAGTGT-GTGCTCGCTTAGTTTGCA 179
                           * * *     *   ** *     * * *  * ** * * *** ** * **    *

consensus_4409#0      CGAATAGTATGATAAGCACCAGAAAGAACCAAT-TTCATAGTGTGTGTGGTGTGTCAAAC 199
consensus_4409#1      AGAGCATTTAGTTGGGAGAAAATACAGAACAGTGCTAAGAGCTAGTAGCATTATTCTGTT 239
                       **  * *  * *  *    *  *   * ** *  * * **   **    *   **    

consensus_4409#0      ACGCAAATAGTAATGCGTTATCCATCGTCCCTATATTCAATATGGTACAGTATTTTATTC 259
consensus_4409#1      TCAGGACAATCGACGTTCCCTCC-TCGTCCCTATATTCAATATGGTACAGTATTTCATTC 298
                       *   *  *   * *     *** ******************************* ****

consensus_4409#0      GAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACAGAA-TACACAGTAT 318
consensus_4409#1      GAGCGAGTGACAATAATTGATATGCAAAAGCGCAAAACATAAAACATAACTTCACAGTAT 358
                      ********************************************** ** * ********

consensus_4409#0      TGCCCCCGGCTAGTTTGTTAGATTGAGATTGAGTTTATTGCAGCTGAATGGTATTCCTTA 378
consensus_4409#1      TGCCCCCGGCTAGTTTGTNAGATTGAGATTGAGTTTATTGCAGCGGAATGGTATTCCTTA 418
                      ****************** ************************* ***************

consensus_4409#0      CTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCA---AAA 435
consensus_4409#1      CTGCTGGAATTGATCCAATTTGGTACGGTAGAAATACGAATAATCTCGATTGCACTTGAC 478
                      ******************************************************    * 

consensus_4409#0      AAACACAATACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGAC 495
consensus_4409#1      AAGAACAAAACATACACGTGCTACTGGTGATAAGCGAATGGATTTGTTATGGATTCCGAC 538
                      **  **** ***************************************************

consensus_4409#0      AAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGTTACAGAGAGGAAAG 555
consensus_4409#1      AAGATCAAACCAAGTTCTGATGTAATTTTGGAATGTAAATTGTTGCTACAGAGAGGAAAG 598
                      ********************************************* **************

consensus_4409#0      CAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGT 615
consensus_4409#1      CAATGATGTTGAGCGTGTGTAGTACATATAGTGAGACCTTACACGGTGGAAAGCAAACGT 658
                      ************************************************************

consensus_4409#0      ATCAACAAAGCAAAACGAAAACAAGTGTATTTGTCCACCCCACGCCACCCCCACAACAGA 675
consensus_4409#1      ATCAA------------------------------------------------------- 663
                      *****                                                       

consensus_4409#0      AAGGCCTGAATTGTTAATGAAAGCAAATATTATTACGGTAAACGATGACGAACCCTCCCC 735
consensus_4409#1      ------------------------------------------------------------
                                                                                  

consensus_4409#0      CCTTTAAAAAANGAAAGGNGTTTCGAGTTTTACAATCATATCCTCTG 782
consensus_4409#1      -----------------------------------------------