cluster # 4412

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Anopheles gambiae
cluster # 4412 cluster # 4412 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4412#0 length = 641 sequences # 2

consensus_4412#1 length = 558 sequences # 1

consensusID : consensus_4412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 641
fasta sequence

                              [CCGCCCACGCGTCCGAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC]

[+] EMBL BM590678             [CCGCCCACGCGTCCGAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCAT                                                       ]
[+] EMBL CNS093GS             [                                   tagagcccGCTTCCGTGTGAGC AATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGG TGAAAAACAGGAATCAAAGAAAATTGATATTGTGCTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACATTCGCTCCTTCGCCGGATCAGATAATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTTGAACATGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC]




>consensus_4412#0
CCGCCCACGCGTCCGAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAA
TTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGA
AGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGG
AATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGA
AGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGT
ATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTT
CGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTC
TCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGA
TTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTC
ATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC

consensusID : consensus_4412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTAT]

[+] EMBL BM621675             [CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAAATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAGAAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAGGAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAGAAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAGTATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCTTCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATTCTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTGATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATTCATTTCTTGTAAGCTTAT]




>consensus_4412#1
CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAA
ATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAG
AAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAG
GAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAG
AAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAG
TATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCT
TCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATT
CTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTG
ATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATT
CATTTCTTGTAAGCTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4412#0      CCGCCCACGCGTCCG-AAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAA 59
consensus_4412#1      CCGGTGAATTTTGCACAAAGTAGAAGGCACTTTTTGGTGAAACAGCTTCTGTGTGAGCAA 60
                      ***   *    * *  ********************************************

consensus_4412#0      ATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAG 119
consensus_4412#1      ATTTGCGACGAAACCATGGCAGAAGAGGCTGAAGCGACCGGCATTGACAACAATAGCGAG 120
                      ************************************************************

consensus_4412#0      AAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAG 179
consensus_4412#1      AAGGATTTGGCGACGAATGTGGAAAATCTCTCCCTGACGAACCAGAAGGTTGAAAAACAG 180
                      ************************************************************

consensus_4412#0      GAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAG 239
consensus_4412#1      GAATCAAAGAAAATTGATATTGTACTTCATGCCACCGGCAGTGCACCGATCTTGAAGCAG 240
                      ************************************************************

consensus_4412#0      AAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAG 299
consensus_4412#1      AAGAAATGGGCAGTGGACCAGGAAAAGCCCATCAGCGCTATTGTAAAGTTTATCCATAAG 300
                      ************************************************************

consensus_4412#0      TATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCT 359
consensus_4412#1      TATCTAAAGCTGGATGCGGAAGAACGATTGTTTCTCTACATAAACCAAACTTTCGCTCCT 360
                      ************************************************************

consensus_4412#0      TCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATT 419
consensus_4412#1      TCGCCGGATCAGATCATCAAAAACCTGTACGAATGTTACGGGACCAACGGAAAACTGATT 420
                      ************************************************************

consensus_4412#0      CTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTG 479
consensus_4412#1      CTCCACTACGCCAAAACCCAGGCATGGGGATAGAGCAGGGAGCCGCTGCTGTCGAACGTG 480
                      ************************************************************

consensus_4412#0      ATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATT 539
consensus_4412#1      ATTTCGCCCCAAAGAAACGCTTCATTCCCCCCAACACACCGACCGTATTAGTTCGTAATT 540
                      ************************************************************

consensus_4412#0      CATTTCTTGTAAGCTTATTCTGAGTGCAGGAATAAAACACACGCCATAAAAAAAAAAAAA 599
consensus_4412#1      CATTTCTTGTAAGCTTAT------------------------------------------ 558
                      ******************                                          

consensus_4412#0      AAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCCC 641
consensus_4412#1      ------------------------------------------