cluster # 4415

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Anopheles gambiae
cluster # 4415 cluster # 4415 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4415#0 length = 636 sequences # 2

consensus_4415#1 length = 122 sequences # 1

consensusID : consensus_4415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence

                              [CCGGGCTAATAGCGTTATGTTTATTCCCTTTTCGACCTTTCTCTCCCTCCCATTCTGTCTCTCGATCATGTTCTCTCTCTCTTACACATATTGCTTTTTTCCTTTAGTTTCACACTGCATTTCCGTTTCTCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTATTTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGGTTCGATTGATTTTTTTCTCCTCTTGTTTACATTCAGCTTGGTTTGTCTTTCATTTTGGTATTTTTCTGATTTCGGTTGAGTTTTCTGTCCTTTGTTTTCGGTTCGATTTTTGATTGGTATGATTTTTGTTATATTGCTTTGATGATTTTTAATAATTATTATATCACAAAACCTGCAAGTTTGAGTAAACCGGAATACAGTTTCGCATTTTTTGCTTATGATGACCATACTTGCAAGATTGTACATTCACAACGACTAAAGATCGCACCAAAAACTCGAAAACCAGCTGACCAAAGGAATGTGCTGATGGAGGTTACAAGCGCTACCAGTGCTTCGCTGCGAGCCCGTCGCAGACGCTCAAACCCAGCCAAATGTCAATTAAACGCCACAAGCACG]

[+] EMBL BM633989             [CCGGGCTAATAGCGTTATGTTTATTCCCTTTTCGACCTTTCTCTCCCTCCCATTCTGTCTCTCGATCATGTTCTCTCTCTCTTACACATATTGCTTTTTTCCTTTAGTTTCACACTGCATTTCCGTTTCTCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTATTTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGGTTCGATTGATTTTTTTCTCCTCTTGTTTACATTCAGCTTGGTTTGTCTTTCATTTTGGTATTTTTCTGATTTCGGTTGAGTTTTCTGTCCTTTGTTTTCGGTTCGATTTTTGATTGGTATGATTTTTGTTATATTGCTTTGATGATTTTTAATAATTATTATATCACAAAACCTGCAAGTTTGAGTAAACCGGAATACAGTTTCGCATTTTTTGCTTATGATGACCATACTTGCAAGATTGTACATTCACAACGACTAAAGATCGCACCAAAAACTCGAAAACCAGCTGACCAAAGGAATGTGCTGATGGAGGTTACAAGCGCTACCAGTGCTTCGCTGCGAGCCCGTCGCAGACGCTCAAACCCAGCCAAATGTCAATTAAACGCCACAAGCACG]
[+] EMBL BM642738             [                                                                                              TTTTTTCCTTTAGTTTCACACTGCATTTCCGTTTCTCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTATTTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGGTTCGATTGATTTTTTTCTCCTCTTGTTTACATTCAGCTTGGTTTGTCTTTCATTTTGGTATTTTTCTGATTTCGGTTGAGTTTTCTGTCCTTTGTTTTCGGTTCGATTTTTGATTGGTATGATTTTTGTTATATTGCTTTGATGATTTTTAATAATTATTATATCACAAAACCTGCAAGTTTGAGTAAACCGGAATACAGTTTCGCATTTTTTGCTTATGATGACCATACTTGCAAGATTGTACATTCACAACGACTAAAG                                                                                                                                       ]




>consensus_4415#0
CCGGGCTAATAGCGTTATGTTTATTCCCTTTTCGACCTTTCTCTCCCTCCCATTCTGTCT
CTCGATCATGTTCTCTCTCTCTTACACATATTGCTTTTTTCCTTTAGTTTCACACTGCAT
TTCCGTTTCTCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTAT
TTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGG
TTCGATTGATTTTTTTCTCCTCTTGTTTACATTCAGCTTGGTTTGTCTTTCATTTTGGTA
TTTTTCTGATTTCGGTTGAGTTTTCTGTCCTTTGTTTTCGGTTCGATTTTTGATTGGTAT
GATTTTTGTTATATTGCTTTGATGATTTTTAATAATTATTATATCACAAAACCTGCAAGT
TTGAGTAAACCGGAATACAGTTTCGCATTTTTTGCTTATGATGACCATACTTGCAAGATT
GTACATTCACAACGACTAAAGATCGCACCAAAAACTCGAAAACCAGCTGACCAAAGGAAT
GTGCTGATGGAGGTTACAAGCGCTACCAGTGCTTCGCTGCGAGCCCGTCGCAGACGCTCA
AACCCAGCCAAATGTCAATTAAACGCCACAAGCACG

consensusID : consensus_4415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 122
fasta sequence

                              [CCGCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTATTTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGAGGAGATAGC]

[+] EMBL BM642341             [CCGCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTATTTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGAGGAGATAGC]




>consensus_4415#1
CCGCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTATTTCTGTT
TTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGAGGAGATA
GC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4415#0      CCGGGCTAATAGCGTTATGTTTATTCCCTTTTCGACCTTTCTCTCCCTCCCATTCTGTCT 60
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      CTCGATCATGTTCTCTCTCTCTTACACATATTGCTTTTTTCCTTTAGTTTCACACTGCAT 120
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      TTCCGTTTCTCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTAT 180
consensus_4415#1      -------CCGCGTTCTTTTGTCTCTTTCTGATTTTCTAATGATTGTCTCTTATTTTTTAT 53
                              * **************************************************

consensus_4415#0      TTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGG 240
consensus_4415#1      TTCTGTTTTGCTATCTCCTCTTTGTGTTGTTATTTGTTTATTTTCCTCCTTTAGCAAAGA 113
                      *********************************************************** 

consensus_4415#0      TTCGATTGATTTTTTTCTCCTCTTGTTTACATTCAGCTTGGTTTGTCTTTCATTTTGGTA 300
consensus_4415#1      GGAGATAGC--------------------------------------------------- 122
                         *** *                                                    

consensus_4415#0      TTTTTCTGATTTCGGTTGAGTTTTCTGTCCTTTGTTTTCGGTTCGATTTTTGATTGGTAT 360
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      GATTTTTGTTATATTGCTTTGATGATTTTTAATAATTATTATATCACAAAACCTGCAAGT 420
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      TTGAGTAAACCGGAATACAGTTTCGCATTTTTTGCTTATGATGACCATACTTGCAAGATT 480
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      GTACATTCACAACGACTAAAGATCGCACCAAAAACTCGAAAACCAGCTGACCAAAGGAAT 540
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      GTGCTGATGGAGGTTACAAGCGCTACCAGTGCTTCGCTGCGAGCCCGTCGCAGACGCTCA 600
consensus_4415#1      ------------------------------------------------------------
                                                                                  

consensus_4415#0      AACCCAGCCAAATGTCAATTAAACGCCACAAGCACG 636
consensus_4415#1      ------------------------------------