cluster # 4419

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4419 cluster # 4419 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4419#0 length = 1044 sequences # 2

consensus_4419#1 length = 336 sequences # 1

consensusID : consensus_4419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1044
fasta sequence

                              [AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCGGTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTACGGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTGTGGACCCGGAACCATCTTCATCGAACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTAGACGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGATCTTTACATCTTATGCGTATCGCAACAGGCTGCTCCTCTTCGCTGTCCACCCGGCGAGATCTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGTCGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTCCCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTGCGGTCATTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGAAATATTGCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGAGCCCGTGGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAACTGCCAGTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGACGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGCACTAC]

[+] EMBL BX622212             [AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCGGTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTACGGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTGTGGACCCGGAACCATCTTCATCGAACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTAGACGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGATCTTTACATCTTATGCGTATCGCAACAGGCTGCTCCTCTTCGCTGTCCACCCGGCGAGATCTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGTCGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTCCCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX623023             [                                                                                                                                                                                                                                                                                                                                                            CGGCGAGATCTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGTCGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTCCCGCTTTGTCGTGTGCAACGGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTGCGGTCATTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGAAATATTGCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGAGCCCGTGGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAACTGCCAGTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGACGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGCACTAC]




>consensus_4419#0
AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCG
GTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTAC
GGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTGTGGACCCGGAACCAT
CTTCATCGAACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTAGA
CGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGATCT
TTACATCTTATGCGTATCGCAACAGGCTGCTCCTCTTCGCTGTCCACCCGGCGAGATCTT
GAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCCCGT
CGAGACAATGTGCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGAGTGTTC
CCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGGGCAGAT
TCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTTTCTTGA
TGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTGCGGTCA
TTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGAAATATT
GCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGAGCCCGT
GGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAACTGCCA
GTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGGAACCAT
CTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGA
CGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGCGCTGTT
CCTGCTGTGCACATCGGGCACTAC

consensusID : consensus_4419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [GCAGGCCAGAATCGCCACGAGGNAAGCAACCAACGCTCGAGACTTGCTCGTCCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCTCATCCGGAGGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGATCTTACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCACCGGTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA]

[+] EMBL BX469123             [GCAGGCCAGAATCGCCACGAGGNAAGCAACCAACGCTCGAGACTTGCTCGTCCTGGAACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTTGATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCTCATCCGGAGGGTTGTGCGCTGTTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGATCTTACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCACCGGTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA]




>consensus_4419#1
GCAGGCCAGAATCGCCACGAGGNAAGCAACCAACGCTCGAGACTTGCTCGTCCTGGAACC
ATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTT
GATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCTCATCCGGAGGGTTGTGCGCTG
TTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGATCTT
ACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCACCG
GTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4419#0      AACCATCTACAATGCTCCGTCGCGCTCGTGCGTGCCAGGAAATCAGGACACCTGCGAGCG 60
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GTTCAACGATATCTGTGTTGGTCGACCTGATGGCACGTACTCTCATCCAACGATTTGTAC 120
consensus_4419#1      ----------------------------------------------------------GC 2
                                                                                 *

consensus_4419#0      GGCGTACATCAATTGTGTTGGAGGTCAGCCAACGTTCGAACAGTG-TGGACCCGGAACCA 179
consensus_4419#1      AGGCCAGAATCGCCACGAGGNAAG-CAACCAACGCTCGAGACTTGCTCGTCCTGGAACCA 61
                       *   * *        *  * * * ** ****** ****    ** * * ** *******

consensus_4419#0      TCTTCATCG-AACAGCTCGGTGGTTGCGTTGTTGGTAATACGCAAACTTGCACTCGAGTA 238
consensus_4419#1      TCTTCCGCGCAACGACACAATC-CTGCGTCGCTGGCAATGGTGATACGTGCACGTTCCTT 120
                      *****  ** ***  * *  *   ***** * *** ***    * ** *****     * 

consensus_4419#0      GACGGTCTCTGTGTGGGACAACCGGACGGAGCGATTCTTGCACATCCCAACGAATGTGAT 298
consensus_4419#1      GATTATTCGTGTGCAGGACGTCCCGATGGAGTGATACCT---CATCCGGAGGGTTGTGCG 177
                      **   *   ****  ****  ** ** **** *** * *   *****  * *  ****  

consensus_4419#0      CTTTACATCTTATGCGTATCGCAACAG-GCTGCTCCTCTTCGCTGTCCACCCGGCGAGAT 357
consensus_4419#1      CTGTTCCTGCTGTGCACATCGGGGCACTACTGCCGCTTTCCGCTGTCCGGAGGGTGAGAT 237
                      ** * * *  * ***  ****   **   ****  ** * ********    ** *****

consensus_4419#0      CTTGAACGTACAGGCGCAGTTCTGTGCTCCGGGCAATGCAAACACCTGCCAGTTCGACCC 417
consensus_4419#1      CTTACATCCGGAGTTCCTGGTCTGTGCGGCAGGCAATGCCGATGACTGTTCGTATGGNCA 297
                      ***  *     **   * * *******  * ********  *   ***   **  *  * 

consensus_4419#0      C--GTCGAGACAATGT-GCCAAAACATGGCAGACGGTGCGATCTATCCACATCCGAGTGA 474
consensus_4419#1      CCGGTCACTACTGAGCCACCGAGTCATTTCCGTTTGTGA--------------------- 336
                      *  ***   **   *   ** *  ***  * *   ***                      

consensus_4419#0      GTGTTCCCGCTTTGTCGTGTGCAACAGTGGGCAGGCAACGGTGGCGGACTGTCCGGCCGG 534
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GCAGATTCTTCACGCACCGACCCAATCGTGCCGTCCGGGCAATACAGCCACCTGCGAGTT 594
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      TCTTGATGGAGTGTGCTCGAACCGTCCCGATGGCTGGGTGATCGAGCATCCGAACCTTTG 654
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      CGGTCATTTCATAATATGTCAGGGAGGCACGGTGTCGGTTAATCCTTGCCCACCTGGTGA 714
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      AATATTGCGTCCCGATGCTCAGTTCTGCGTGCCGGGAGATCCGGCAACCTGCGGCTTCGA 774
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GCCCGTGGAGCGTATGTGCCTTGGGCGACCGGATGGCATCATCTATCCCCATCCGACCAA 834
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      CTGCCAGTTGTACATTAGCTGTCAAAACTCGCAAGCAGTTGTAACGTCCTGCCGACCTGG 894
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      AACCATCTTCCGCGCAACGACACAATCCTGCGTCGCTGGCAATGGTGATACGTGCACGTT 954
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      CCTTGACGGTACATGCGTTGGCCGTCCCGATGGAGTGATACCTCATCCGGANGGTTGTGC 1014
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GCTGTTCCTGCTGTGCACATCGGGCACTAC 1044
consensus_4419#1      ------------------------------