These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence [CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCGCAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAGCTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGTCTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGCCGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTAGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAAGGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTTTATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA] [+] EMBL BM596606 [CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCGCAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAGCTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGTCTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGCCGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTAGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTA ] [+] EMBL BM626102 [ ccgGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT GCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCA TCTTGGTGGCGTCTCCCCGGGCAAGGG GAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAAGGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTTTATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA] consensusID : consensus_4428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCGGGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAAGAAAATC] [+] EMBL BM586751 [CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCGGGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAAGAAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4428#0 CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCG 60 consensus_4428#1 ------------------------------------------------------------ consensus_4428#0 CAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAG 120 consensus_4428#1 ------------------------------------------------------------ consensus_4428#0 CTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGT 180 consensus_4428#1 ------------------------------------------------------------ consensus_4428#0 CTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGC 240 consensus_4428#1 ------------------------------------------------------------ consensus_4428#0 CGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC 300 consensus_4428#1 ---------------------CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC 39 ** ************************************ consensus_4428#0 GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT 360 consensus_4428#1 GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT 99 ************************************************************ consensus_4428#0 CGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA 420 consensus_4428#1 CGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA 159 ************ *********************************************** consensus_4428#0 AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT 480 consensus_4428#1 AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT 219 ************************************************************ consensus_4428#0 AGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA 540 consensus_4428#1 -GCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA 278 *********************************************************** consensus_4428#0 TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG 600 consensus_4428#1 TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG 338 ************************************************************ consensus_4428#0 TCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGT 660 consensus_4428#1 TCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGT 398 *************************** ******************************** consensus_4428#0 CCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGAT 720 consensus_4428#1 CCAT-CTTGGTGGCGTCTCCCCGGGCAAGGG-GAGTTGACGCCTAGCAGCTAGCAGAGAT 456 **** ************************** **************************** consensus_4428#0 GCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAA 780 consensus_4428#1 GCTCATCAT-CTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAA 515 ********* * * * * ** ** ** * ** ********************** consensus_4428#0 -GGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTT 839 consensus_4428#1 AGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTT 575 ******* ************************ ************************** consensus_4428#0 TT-ATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGG 898 consensus_4428#1 TTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGG 635 ** **** ************************ ************************** consensus_4428#0 GCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAA 958 consensus_4428#1 GCGGGAG------CGGGTGACCTTTGTCGAAGAAAATC---------------------- 667 ** *** ** *** * ** * * * consensus_4428#0 GAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA 998 consensus_4428#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||