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Anopheles gambiae
cluster # 4428 cluster # 4428       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4428#0 length = 998 sequences # 2  
consensus_4428#1 length = 667 sequences # 1  

consensusID : consensus_4428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 998
fasta sequence
                              [CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCGCAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAGCTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGTCTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGCCGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTAGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAAGGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTTTATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA]

[+] EMBL BM596606             [CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCGCAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAGCTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGTCTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGCCGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTAGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTA                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM626102             [                                                                                                                                                                                                                                                                                                                                                           ccgGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT GCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGTCCA TCTTGGTGGCGTCTCCCCGGGCAAGGG GAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAAGGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTTTATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA]


>consensus_4428#0 CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCG CAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAG CTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGT CTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGC CGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT CGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT AGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG TCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGT CCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGAT GCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAA GGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTTT TATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGGGC AAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAAGA AAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA



consensusID : consensus_4428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence
                              [CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCGGGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAAGAAAATC]

[+] EMBL BM586751             [CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCGGGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAAGAAAATC]


>consensus_4428#1 CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCCGCTGAAACCGTTCCTAGTGGA AGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGATCGTGAACCGCCTCTCCTCGAA CATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGAAATCTTCACCGAGCTGAAGGC GTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCTGCCGTGCGGTGCGGCTTGACG CTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGATTGCCGGCCAGCAGCAGAAGTA CCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCGTCGTCTGATGCGCACCGTAAAT GCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGTCCATCTTGGTGGCGTCTCCCCG GGCAAGGGGAGTTGACGCCTAGCAGCTAGCAGAGATGCTCATCATCTCATCATACGCCAG AAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAAAGGAGATACGTTTAATAGTTCGTTG GGAATGTAGCATTCCTTATTCCATTTATTGTTTTTTTTATTGGTGCGTCCTCATCCCGTG CCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGGGCGGGAGCGGGTGACCTTTGTCGAA GAAAATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4428#0      CCGGGCATCGACGTCAGAGCTGCTAAAATGTTTAGGAATGTTCCTGCACGACCGATGCCG 60
consensus_4428#1      ------------------------------------------------------------
                                                                                  

consensus_4428#0      CAAGCTACGCGACTTCCAGGCCGGCGACGCTGTGATGTGGCTGAGGGCCGTCGACAGAAG 120
consensus_4428#1      ------------------------------------------------------------
                                                                                  

consensus_4428#0      CTTGCTGCTTCAAGGATGGCAGGACGTTGCCTTCATCAACCCAGCGAACGTGGTGTTCGT 180
consensus_4428#1      ------------------------------------------------------------
                                                                                  

consensus_4428#0      CTACATGCTCGTCCGCGAGCTGGTCGACGGCGAGGAAACGAAGGAAGCGGAACTGCAAGC 240
consensus_4428#1      ------------------------------------------------------------
                                                                                  

consensus_4428#0      CGCCGTCCTAACCTGCCTCTACCTGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC 300
consensus_4428#1      ---------------------CCGGTCCTACTCGTACATGGGCAATGAAATTAGCTACCC 39
                                           ** ************************************

consensus_4428#0      GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT 360
consensus_4428#1      GCTGAAACCGTTCCTAGTGGAAGACTCGAAGGACAAGTTCTGGGACAGATGTTTGCTGAT 99
                      ************************************************************

consensus_4428#0      CGTGAACCGCCTTTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA 420
consensus_4428#1      CGTGAACCGCCTCTCCTCGAACATGCTGCGCATTAACGCCGAGCCGGGCTTCTTCACCGA 159
                      ************ ***********************************************

consensus_4428#0      AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT 480
consensus_4428#1      AATCTTCACCGAGCTGAAGGCGTGCGGCATGAGCACGAACGCGAACGCCGGCGGCAACCT 219
                      ************************************************************

consensus_4428#0      AGCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA 540
consensus_4428#1      -GCCGTGCGGTGCGGCTTGACGCTCCCGGCATCCGCGCGAGGTCGTCGTCCGGCTCTCGA 278
                       ***********************************************************

consensus_4428#0      TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG 600
consensus_4428#1      TTGCCGGCCAGCAGCAGAAGTACCAGCACGCGACCAGCACCCTGCAGGAGCTGACCAGCG 338
                      ************************************************************

consensus_4428#0      TCGTCTGATGCGCACCGTAAATGCGGGGACCATCCCCCACTCTCGCAACCCCATCTTGGT 660
consensus_4428#1      TCGTCTGATGCGCACCGTAAATGCGGGAACCATCCCCCACTCTCGCAACCCCATCTTGGT 398
                      *************************** ********************************

consensus_4428#0      CCATTCTTGGTGGCGTCTCCCCGGGCAAGGGAGAGTTGACGCCTAGCAGCTAGCAGAGAT 720
consensus_4428#1      CCAT-CTTGGTGGCGTCTCCCCGGGCAAGGG-GAGTTGACGCCTAGCAGCTAGCAGAGAT 456
                      **** ************************** ****************************

consensus_4428#0      GCTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAACGGTGAAAGTGAAACAAAAAAA 780
consensus_4428#1      GCTCATCAT-CTCATCATACGCCAGAAAAAGGAGGAATCGGTGAAAGTGAAACAAAAAAA 515
                      ********* * *   * *    ** **  ** * ** **********************

consensus_4428#0      -GGAGATATGTTTAATAGTTCGTTGGGAATGTACCATTCCTTATTCCATTTATTGTTTTT 839
consensus_4428#1      AGGAGATACGTTTAATAGTTCGTTGGGAATGTAGCATTCCTTATTCCATTTATTGTTTTT 575
                       ******* ************************ **************************

consensus_4428#0      TT-ATTGATGCGTCCTCATCCCGTGCCCCGTCTTGTGCGATTGCGCTGGATAGCAATTGG 898
consensus_4428#1      TTTATTGGTGCGTCCTCATCCCGTGCCCCGTCCCGTGCGATTGCGCTGGATAGCAATTGG 635
                      ** **** ************************  **************************

consensus_4428#0      GCAAGAGCATGCCCGAGTGGGGCGGTGCACAGGAGAGCAAGACGGGTGACCTTTGTCGAA 958
consensus_4428#1      GCGGGAG------CGGGTGACCTTTGTCGAAGAAAATC---------------------- 667
                      **  ***      ** ***        *  ** * * *                      

consensus_4428#0      GAAAAGAAAAATCTGCACTCTGCAATTTGCCTCAACTTTA 998
consensus_4428#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)