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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1076 fasta sequence
[CCGCAAAGATGGCAAAGTTGTTCGGCAGGGAAACGGTAAGGCGAAAGCTGTATCACACAATCATCCCATTAACGGTGAATATATTGAGCGGGCAGTGCCGTTTGAATTGGCAGATCTCGACCCACCTGCAGAGAACTTGGGTGTGTTTGCTGCTCAATGGTTGAATGGAGCGTACAGCGGAACGCTTAGTGGCAAACCAATTAACTCCTCCTCCTCCTCACCTAAAACCACTGAACGCATTGATCGACACAAAGTGATACACCATAAAAACTTCTCTTACAAACTGCAGACAATTAAGAACGGTCGAGAATGCTGGCGCTGTACAATGTTCCAAACAAGGGCTTGTCGGGCTGCTCTGTTTTGTCACAAAAATGGCAAAATTGTAGAATGCACCAATGGGCGTCCGCATAACCACGAAGCAACCAAGTCGCGATCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCCCAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTACTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGCATACCAAGTAGTGCAAAGGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGTTGCTTTGAGTAAACGGGATGCTGCCGATAAACCAAGTCCGGTGGCGTTGTTGTTTGTGGAACAGCCGTCATCAGTGCCCGGTAGAGCTGAAAATCCTGCCAACTGACGAAATACAATTCGAAACGGACCCAACGCACAACCATCGACCACCTCCGGCTGAGCCTCTAGAAATGGAGCGTGCTCCTTCCGTGCCCAATGTGAAAGGTTCCAGAAAGTACCAGCTAATGGGACGATCTGAGAGGACCGTTTTTTACAAAGGATATAAATATTTCTGGAAAGAACGAAAGGACGATATGACGCACTACAACTGTATATGCAACGTTTTCCCATGGATGTCCGATGAGTGTGAAAATAGATCCAAATGGATTGCTGTTTGAATGTTCCAACGCTTCCCACAACCACGAGGCGACAGCAGA]
[+] EMBL BM582924 [CCGCAAAGATGGCAAAGTTGTTCGGCAGGGAAACGGTAAGGCGAAAGCTGTATCACACAATCATCCCATTAACGGTGAATATATTGAGCGGGCAGTGCCGTTTGAATTGGCAGATCTCGACCCACCTGCAGAGAACTTGGGTGTGTTTGCTGCTCAATGGTTGAATGGAGCGTACAGCGGAACGCTTAGTGGCAAACCAATTAACTCCTCCTCCTCCTCACCTAAAACCACTGAACGCATTGATCGACACAAAGTGATACACCATAAAAACTTCTCTTACAAACTGCAGACAATTAAGAACGGTCGAGAATGCTGGCGCTGTACAATGTTCCAAACAAGGGCTTGTCGGGCTGCTCTGTTTTGTCACAAAAATGGCAAAATTGTAGAATGCACCAATGGGCGTCCGCATAACCACGAAGCAACCAAGTCGCGATCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCCCAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTACTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGCATACCAAGTAGTGCAAAGGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGTTGCTTTGAGTAAACGG ]
[+] EMBL BM611717 [ ccgCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCCCAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTACTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGCATACCAAGTAGTGCAAAGGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGTTGCTTTGAGTAAACGGGATGCTGCCGATAAACCAAGTCCGGTGGCGTTGTTGTTTGTGGAACAGCCGTCATCAGTGCCCGGTAGAGCTGAAAATCCTGCCAACTGACGAAATACAATTCGAAACGGACCCAACGCACAACCATCGACCACCTCCGGCTGAGCCTCTAGAAATGGAGCGTGCTCCTTCCGTGCCCAATGTGAAAGGTTCCAGAAAGTACCAGCTAATGGGACGATCTGAGAGGACCGTTTTTTACAAAGGATATAAATATTTCTGGAAAGAACGAAAGGACGATATGACGCACTACAACTGTATATGCAACGTTTTCCCATGGATGTCCGATGAGTGTGAAAATAGATCCAAATGGATTGCTGTTTGAATGTTCCAACGCTTCCCACAACCACGAGGCGACAGCAGA]
consensusID : consensus_4430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[GAATCGCCACGAGGCAGACATTAAGAACGGTCGAGAATGCTGGCGCTGTACAATGTTCCAAACAAGAGCTTGTCGGGCTGCTCTGTTTTGTCACAAAAATGGCAAAATTGTAGAATGTACGAATGGGCGTCCGCATAACCACGAAGCAACCAAGTCGCGATCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCCCAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTACTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGCATACCAAGTAGTGCAAAAGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGTTGCTTTGAGTAAACGGGATGCTGCCGATAAACCAAGTCGGTGGCGTTGTTGTTTGTGGAACAGCCGTCATCAGTGCCCGGTAGAG]
[+] EMBL AL932725 [GAATCGCCACGAGGCAGACATTAAGAACGGTCGAGAATGCTGGCGCTGTACAATGTTCCAAACAAGAGCTTGTCGGGCTGCTCTGTTTTGTCACAAAAATGGCAAAATTGTAGAATGTACGAATGGGCGTCCGCATAACCACGAAGCAACCAAGTCGCGATCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCCCAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTACTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGCATACCAAGTAGTGCAAAAGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGTTGCTTTGAGTAAACGGGATGCTGCCGATAAACCAAGTCGGTGGCGTTGTTGTTTGTGGAACAGCCGTCATCAGTGCCCGGTAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4430#0 CCGCAAAGATGGCAAAGTTGTTCGGCAGGGAAACGGTAAGGCGAAAGCTGTATCACACAA 60
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 TCATCCCATTAACGGTGAATATATTGAGCGGGCAGTGCCGTTTGAATTGGCAGATCTCGA 120
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 CCCACCTGCAGAGAACTTGGGTGTGTTTGCTGCTCAATGGTTGAATGGAGCGTACAGCGG 180
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 AACGCTTAGTGGCAAACCAATTAACTCCTCCTCCTCCTCACCTAAAACCACTGAACGCAT 240
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 TGATCGACACAAAGTGATACACCATAAAAACTTCTCTTACAAACTGCAGACAATTAAGAA 300
consensus_4430#1 ---------------------------GAATCGC---CACGAG--GCAGACA-TTAAGAA 27
** * ** * ******* *******
consensus_4430#0 CGGTCGAGAATGCTGGCGCTGTACAATGTTCCAAACAAGGGCTTGTCGGGCTGCTCTGTT 360
consensus_4430#1 CGGTCGAGAATGCTGGCGCTGTACAATGTTCCAAACAAGAGCTTGTCGGGCTGCTCTGTT 87
*************************************** ********************
consensus_4430#0 TTGTCACAAAAATGGCAAAATTGTAGAATGCACCAATGGGCGTCCGCATAACCACGAAGC 420
consensus_4430#1 TTGTCACAAAAATGGCAAAATTGTAGAATGTACGAATGGGCGTCCGCATAACCACGAAGC 147
****************************** ** **************************
consensus_4430#0 AACCAAGTCGCGATCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCC 480
consensus_4430#1 AACCAAGTCGCGATCGGATGCACAGGAAGATGTTACCCCACACAAGACAAATAGTGGTCC 207
************************************************************
consensus_4430#0 CAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTA 540
consensus_4430#1 CAGAGCGAAATCCACAGCCACAGAGACAGCAGTCGCTGTGTATCGTGGTTCCGAACAGTA 267
************************************************************
consensus_4430#0 CTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGC 600
consensus_4430#1 CTCCGATCAAAACAACAAACATCAGCCCAATGAAGAGAGTGCTGAAAGTCCAACACCTGC 327
************************************************************
consensus_4430#0 ATACCAAGTAGTGCAAAGGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGT 660
consensus_4430#1 ATACCAAGTAGTGCAAAAGGATGGAGTTAATATTCTGCACTATGAAAGACATCGGTACGT 387
***************** ******************************************
consensus_4430#0 TGCTTTGAGTAAACGGGATGCTGCCGATAAACCAAGTCCGGTGGCGTTGTTGTTTGTGGA 720
consensus_4430#1 TGCTTTGAGTAAACGGGATGCTGCCGATAAACCAAGTC-GGTGGCGTTGTTGTTTGTGGA 446
************************************** *********************
consensus_4430#0 ACAGCCGTCATCAGTGCCCGGTAGAGCTGAAAATCCTGCCAACTGACGAAATACAATTCG 780
consensus_4430#1 ACAGCCGTCATCAGTGCCCGGTAGAG---------------------------------- 472
**************************
consensus_4430#0 AAACGGACCCAACGCACAACCATCGACCACCTCCGGCTGAGCCTCTAGAAATGGAGCGTG 840
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 CTCCTTCCGTGCCCAATGTGAAAGGTTCCAGAAAGTACCAGCTAATGGGACGATCTGAGA 900
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 GGACCGTTTTTTACAAAGGATATAAATATTTCTGGAAAGAACGAAAGGACGATATGACGC 960
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 ACTACAACTGTATATGCAACGTTTTCCCATGGATGTCCGATGAGTGTGAAAATAGATCCA 1020
consensus_4430#1 ------------------------------------------------------------
consensus_4430#0 AATGGATTGCTGTTTGAATGTTCCAACGCTTCCCACAACCACGAGGCGACAGCAGA 1076
consensus_4430#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||