cluster # 4431

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Anopheles gambiae
cluster # 4431 cluster # 4431 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4431#0 length = 689 sequences # 2

consensus_4431#1 length = 276 sequences # 1

consensusID : consensus_4431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence

                              [GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGCGGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACCTTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGTTTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGCACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCCAAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAGGGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGTGTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAATGGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTATAAAGTGAATTGATGAATTAAGCTAAAATC]

[+] EMBL BX616536             [GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGCGGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACCTTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGTTTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGCACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCCAAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAGGGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGTGTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCG                                                                                                     ]
[+] EMBL BX608586             [                                                                                                                                                                                                                                          AATAGCACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCCAAACTATCGCGGAAATGGAAGGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAGGGGCTTGAAGCTTGGCCGCGTACAGGGAATGATATAGACAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGTGTTGGAATTATTAGAAAAAGAGGGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAATGGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTATAAAGTGAATTGATGAATTAAGCTAAAATC]




>consensus_4431#0
GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGC
GGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACC
TTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGT
TTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGC
ACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCC
AAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCG
TCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAG
GGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGA
GAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGT
GTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAAT
GGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTAT
AAAGTGAATTGATGAATTAAGCTAAAATC

consensusID : consensus_4431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GGATTAATCTTTTCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAATCGAACCAATGGATCCAAGAGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAAAGAGAGAGCCCTAAAGAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAG]

[-] EMBL CNS08DPQ             [GGATTAATCTTTTCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAATCGAACCAATGGATCCAAGAGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAAAGAGAGAGCCCTAAAGAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAG]




>consensus_4431#1
GGATTAATCTTTTCATTCGTCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAA
TCGAACCAATGGATCCAAGAGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAG
AGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGTGAG
AGAGAGAAAGAGAGAGCCCTAAAGAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAG
AGAAAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4431#0      GTTCGATTTCGTAAATATTCCCATTTTTATCTACATCTACATTGCTGCCGAGAGAAAAGC 60
consensus_4431#1      ------------------------------------------------------------
                                                                                  

consensus_4431#0      GGACCGTTGGAAACGTTCACGGCAAAAACGTTCAGTATTTTAGAACGCCTGTCCAAAACC 120
consensus_4431#1      ------------------------------------------------------------
                                                                                  

consensus_4431#0      TTCCCATTCACTACACATTGTTCGGAGTAGGAAGCAGCTAGCAGAAAGTTAGTAAAATGT 180
consensus_4431#1      ------------------------------------------------------------
                                                                                  

consensus_4431#0      TTAAACCGCGCCAACGCTTTTTAGTTTAAAATGGTGCCGAGTGGAAATCCCGGAAATAGC 240
consensus_4431#1      ------------------------------------------------------------
                                                                                  

consensus_4431#0      ACCGTAGCTAATAAAGCGCAGTAGAAACGTTGTTTTATTTTTGTGTGTGTGTGGAACGCC 300
consensus_4431#1      ------------------------------------------------------------
                                                                                  

consensus_4431#0      AAACTATCGCGGAAATGGAATGTATGCAATTTCTTCTTGCCGGATTAATCTTATCATTCG 360
consensus_4431#1      -----------------------------------------GGATTAATCTTTTCATTCG 19
                                                               *********** *******

consensus_4431#0      TCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGTATCGAAACAGTGGATCCAAG 420
consensus_4431#1      TCGTAGAAAATCATTAGCAAACTCGTTAAATGGAAATTGAATCGAACCAATGGATCCAAG 79
                      *************************************** ****** ** **********

consensus_4431#0      GGGCTTGAAGCTTGGCCGCGTACAGGTAATGAGATAGACAGAGAGAGAGAGCGAGAGAGA 480
consensus_4431#1      AGGCTTGAAGATTGGCGGCGAACAGGTAATGAGATAGACAGAGAGAGAGCGAGAGAGAGA 139
                       ********* ***** *** **************************** * ********

consensus_4431#0      GAGAGAGAGAGAGCAAGAGAGAGAGAGATAGATTGATAAAGAGAGCGAGGTAATCAACGT 540
consensus_4431#1      GAGAGCGAGAGAGAAAGAGAGAGAGAGAGAGA--GAGAGTGAGAGAGAGAAAGAGAGAGC 197
                      ***** ******* ************** ***  ** *  ***** ***  *   *  * 

consensus_4431#0      GTTGGAATTATTAGAAAAAGAGTGGGCAATCATGGTTAAGGGCAGCCGAGAGGCTAGAAT 600
consensus_4431#1      CCTAAA-------GAGAGAGAGAGAGACATAGAGAGAGAGCGTGAGAGAGAGAA-AGAGA 249
                        *  *       ** * **** * *  **   *    ** *     *****   ***  

consensus_4431#0      GGAACACGAACAGGAAAATAGTAGAGAAATTTGTAACACGCGAATATAGTTGGAAGGTAT 660
consensus_4431#1      GAGAGAGAAAGAGAGAGATAG-AGAGAG-------------------------------- 276
                      *  * *  ** **  * **** *****                                 

consensus_4431#0      AAAGTGAATTGATGAATTAAGCTAAAATC 689
consensus_4431#1      -----------------------------