cluster # 4437

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4437 cluster # 4437 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4437#0 length = 695 sequences # 2

consensus_4437#1 length = 622 sequences # 1

consensusID : consensus_4437#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence

                              [CCGATTCCCCTATGTGGTTCATAAAAAATCAGCTCATTGTATTTATTGCAAAAAATATAAATTAAATCCTGCCCCATTCCCACGATGGAGGACAAAACAAGCAATCCGTACGATATGGACGGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCGCTGAAGCAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATGCAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAGATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAACTCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTGACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCGGCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCGCACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGCATACAGGAGGACTGCATAAAGATACTGGACGAGCTGAAGGACCGGTTGAAGGGCGAGTTCCGCCAGACGGGCAAATCGGCCCAATCGCTCACGGAAATCGGTGA]

[+] EMBL BM648642             [CCGATTCCCCTATGTGGTTCATAAAAAATCAGCTCATTGTATTTATTGCAAAAAATATAAATTAAATCCTGCCCCATTCCCACGATGGAGGACAAAACAAGCAATCCGTACGATATGGACGGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCGCTGAAGCAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATGCAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAGATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAACTCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTGACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCGGCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCGCACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGCATACAGGAGGACTGCATAAAGATACTGGACGAGCTGAAGGACCGGTTGAAGGGCGAG                                               ]
[+] EMBL BM600085             [      CCGCTATTTTGTTCATAAAAAATCAGCTCATTGTATTTATTGCACAAAATATAAATTAAATCCTGCCCCATTCCCACGATGGGGGACAAAACAAGCAATCCGTACGATATGGACGGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCACTGAAGCAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATGCAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAGATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAACTCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTGACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCGGCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCGCACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGCATACAGGAGGACTGCATAAAGATACTGGACGAGCTGAAGGAGCGGTTGAAGGGCGAGTTCCGCCAGACGGGCAAATCGGCCCAATCGCTCACGGAAATCGGTGA]




>consensus_4437#0
CCGATTCCCCTATGTGGTTCATAAAAAATCAGCTCATTGTATTTATTGCAAAAAATATAA
ATTAAATCCTGCCCCATTCCCACGATGGAGGACAAAACAAGCAATCCGTACGATATGGAC
GGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCGCTGAAG
CAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATG
CAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAG
ATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAAC
TCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTG
ACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCG
GCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCG
CACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGCATACAGGAG
GACTGCATAAAGATACTGGACGAGCTGAAGGACCGGTTGAAGGGCGAGTTCCGCCAGACG
GGCAAATCGGCCCAATCGCTCACGGAAATCGGTGA

consensusID : consensus_4437#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [CCGCGGACGCGTGGGTAAAAAATCAGCTCATTGTATTTATTGCACAAAATATAAATTAAATCCTGCCCCATTCCCACGATGGGGGACAAAACAAGCAATCCGTACGATATGGACGGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCACTGAAGCAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATGCAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAGATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAACTCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTGACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCGGCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCGCACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGGCATACAGGAGGACTGCATAAAGATACTGGACGAGCTT]

[+] EMBL BM594658             [CCGCGGACGCGTGGGTAAAAAATCAGCTCATTGTATTTATTGCACAAAATATAAATTAAATCCTGCCCCATTCCCACGATGGGGGACAAAACAAGCAATCCGTACGATATGGACGGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCACTGAAGCAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATGCAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAGATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAACTCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTGACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCGGCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCGCACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGGCATACAGGAGGACTGCATAAAGATACTGGACGAGCTT]




>consensus_4437#1
CCGCGGACGCGTGGGTAAAAAATCAGCTCATTGTATTTATTGCACAAAATATAAATTAAA
TCCTGCCCCATTCCCACGATGGGGGACAAAACAAGCAATCCGTACGATATGGACGGTTCG
TCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCACTGAAGCAAATC
ATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATGCAAACG
CTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAGATGAAA
ACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAACTCGATC
ACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTGACGCGC
CTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCGGCGAAG
CTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCGCACGCC
CAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGGCATACAGGAGGACTG
CATAAAGATACTGGACGAGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4437#0      CCGATTCCCCTATGTGGTTCATAAAAAATCAGCTCATTGTATTTATTGCAAAAAATATAA 60
consensus_4437#1      -----CCGCGGACGCG-TGGGTAAAAAATCAGCTCATTGTATTTATTGCACAAAATATAA 54
                            * *  * * * *   ***************************** *********

consensus_4437#0      ATTAAATCCTGCCCCATTCCCACGATGGAGGACAAAACAAGCAATCCGTACGATATGGAC 120
consensus_4437#1      ATTAAATCCTGCCCCATTCCCACGATGGGGGACAAAACAAGCAATCCGTACGATATGGAC 114
                      **************************** *******************************

consensus_4437#0      GGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCGCTGAAG 180
consensus_4437#1      GGTTCGTCCTTCGATGCGGATCGTTATCTGCAGAAGCTCCTCAAGGAATGTTCACTGAAG 174
                      ***************************************************** ******

consensus_4437#0      CAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATG 240
consensus_4437#1      CAAATCATGGACACCGAGGCAACGATCGTGCGCCAAACGCAAACACTGCACAGCGACATG 234
                      ************************************************************

consensus_4437#0      CAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAG 300
consensus_4437#1      CAAACGCTCGTGTACGAAAACTACAACAAATTCATCTCGGCCACCGACACCATCCGCAAG 294
                      ************************************************************

consensus_4437#0      ATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAAC 360
consensus_4437#1      ATGAAAACCGACTTCAAGTCGATGGAAACGGAAATGAACCTGCTGATGGCAAACATGAAC 354
                      ************************************************************

consensus_4437#0      TCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTG 420
consensus_4437#1      TCGATCACCGAGTTTAGCGAGCGCATTACGGACACGCTGCAGGAAACGCGCTCCCAGCTG 414
                      ************************************************************

consensus_4437#0      ACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCG 480
consensus_4437#1      ACGCGCCTGTCCGGCAAGCACCAGCTGCTGAAGAAGCTACAGTTTCTTTCCTCCCTGCCG 474
                      ************************************************************

consensus_4437#0      GCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCG 540
consensus_4437#1      GCGAAGCTGAAGACGCTGATCGAGGAGGAGAATTACCAGCAGGCGGTACAGGAGTACTCG 534
                      ************************************************************

consensus_4437#0      CACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGG-CATACAGGA 599
consensus_4437#1      CACGCCCAGAAAGTGCTGCAACAGTACGGCCAGCAGCCGTCGTTCCAGGGGCATACAGGA 594
                      ************************************************** *********

consensus_4437#0      GGACTGCATAAAGATACTGGACGAGCTGAAGGACCGGTTGAAGGGCGAGTTCCGCCAGAC 659
consensus_4437#1      GGACTGCATAAAGATACTGGACGAGCTT-------------------------------- 622
                      ***************************                                 

consensus_4437#0      GGGCAAATCGGCCCAATCGCTCACGGAAATCGGTGA 695
consensus_4437#1      ------------------------------------