These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence [CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTCCATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAAGCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGTTTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTTTTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAAGCCACGACTCACGCGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTGAGCTACACAAACACAAAACTGCGAAACCAGCAAATCGAAATGTAAGATNGACGAAAAGAAATCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGGCATTGTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTTTCAGCNTTGGCACTTGGCCNGTCGTTTAACAAACGTTCCGTGACTTGGGGAAAAACCCTNGGGGNGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTTTTCGGCCACGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAAAGTTTGGGCAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGGCGGGTGTGA] [+] EMBL BX467489 [CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTCCATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAAGCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGTTTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTTTTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAAGCCACGACTCACGCGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTGAGCTACACAAACACAAAACTGCGAAACCAGCAAATCGAAATGTAAGATNGACGAAAAGAAATCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGGCATTGTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTTTCAGCNTTGGCACTTGGCCNGTCGTTTAACAAACGTTCCGTGACTTGGGGAAAAACCCTNGGGGNGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTTTTCGGCCACGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAAAGTTTGGGCAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGGCGGGTGTGA] consensusID : consensus_444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CAAGATAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTATCTTTGCTTTTGCCTTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTAAAAAGCCACGACTCACACGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTACTAAAATGTACATGCAGTGGAGCTACACAAACACAAAACTGCGAAACCGAAGCAAATCGAAATGTAAGATGAGAAAGAATCTCTATTTATTAACAAACAAAAAAAAGAAGCAAACAATCGAACATCATTTATCTAGTTCTATTATCGCTGCTTATATTACTCTATTATTAGCATCCACTACTACTATTATTATTATTATTGCAGCGCTCGTGTATAACGCATGTTGCTTTTACACGCTCTCCTCTCTTGTTGAAACTAGTGGCTAAAGAAATCCAACCTCATCCTCCTCCAACAGACATGAGCTGCTTTTGCATTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAGATATGTACAAGAGTTTTAC] [+] EMBL BX612857 [CAAGATAGGTTTAACCAAGGAAACAAGCAAACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGGTTTAGTAGCAGAGTTTAGGTGTACGTTATCTTTGCTTTTGCCTTTTGCGCATCCCGGTCGTACTACGCACGCGTGTTAACTATTAGTTTTTTTTAAAAAGCCACGACTCACACGTTGAATATAAAAAACCGACACAACCATACTATACTATACTACTACTAAAATGTACATGCAGTGGAGCTACACAAACACAAAACTGCGAAACCGAAGCAAATCGAAATGTAAGATGAGAAAGAATCTCTATTTATTAACAAACAAAAAAAAGAAGCAAACAATCGAACATCATTTATCTAGTTCTATTATCGCTGCTTATATTACTCTATTATTAGCATCCACTACTACTATTATTATTATTATTGCAGCGCTCGTGTATAACGCATGTTGCTTTTACACGCTCTCCTCTCTTGTTGAAACTAGTGGCTAAAGAAATCCAACCTCATCCTCCTCCAACAGACATGAGCTGCTTTTGCATTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAGATATGTACAAGAGTTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_444#0 CCAAGAATCGGCACGAGGGTTTTTTTTTTTTTTAAAATCATTAAATCAATTCAACAACTC 60 consensus_444#1 ------------------------------------------------------------ consensus_444#0 CATTTTTTCTCTTGGACAAAAACGTACCTTCCGTTTCCGCGTGATGCTGCTGCACTTTAA 120 consensus_444#1 ------------------------------------------------------------ consensus_444#0 GCACCGCAAGTCCCACTTTCCATGACCCGCGTGCAAAATGCAATCGAGAAACTGATTTGT 180 consensus_444#1 ------------------------------------------------------------ consensus_444#0 TTGTTCTTAGTGTAATCAAACCTTGAAAGAGGGATGTAAAACAAGGGACTTGGTTAGGTT 240 consensus_444#1 ------------------------------------------------------------ consensus_444#0 TTGGTTAGCTCAAGATACAAAGGAAAGACGGCAAGTTAGGTTTAACCAAGGAAACAAGCA 300 consensus_444#1 -------------------------------CAAGATAGGTTTAACCAAGGAAACAAGCA 29 **** ************************ consensus_444#0 AACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGG 360 consensus_444#1 AACAAACAAACACTCTTAAAGACAAGCTCAAGTAGAAGAGCCCCCTCGAAGAGAAGAGGG 89 ************************************************************ consensus_444#0 TTTAGTAGCAGAGTTTAGGTGTACGTTCTCTTTGCTTTTGCCCTTTGCGCATCCCGGTCG 420 consensus_444#1 TTTAGTAGCAGAGTTTAGGTGTACGTTATCTTTGCTTTTGCCTTTTGCGCATCCCGGTCG 149 *************************** ************** ***************** consensus_444#0 TACTACGCACGCGTGTTAACTATTAGTTTTTTTTTAAA-GCCACGACTCACGCGTTGAAT 479 consensus_444#1 TACTACGCACGCGTGTTAACTATTAGTTTTTTTTAAAAAGCCACGACTCACACGTTGAAT 209 ********************************** *** ************ ******** consensus_444#0 ATAAAAAACCGACACAACCATACTATACTATACTACTTCTACTAAAATGTACATGCAGTG 539 consensus_444#1 ATAAAAAACCGACACAACCATACTATACTATACTA---CTACTAAAATGTACATGCAGTG 266 *********************************** ********************** consensus_444#0 -AGCTACACAAACACAAAACTGCGAAACC--AGCAAATCGAAATGTAAGATNGACGAAAA 596 consensus_444#1 GAGCTACACAAACACAAAACTGCGAAACCGAAGCAAATCGAAATGTAAGATGAGAAAGAA 326 **************************** ******************** * ** consensus_444#0 GAAATCTCCTATGTCTCATTTAAGCAAGAGACAAACGANGACAGAGAAGAAAGCCAGGGG 656 consensus_444#1 TCTCTATTTATTAACAAACAAAAAAAAGAAGCAAACAATCGAACATCATTTATCTAGTTC 386 * * * * * ** **** ***** * * * * * * ** consensus_444#0 CATTGTTGGCGGACCCGCAAAGGCTTTATTTCCCCCTTTTTAGGTCGAGGGGGTTAATTT 716 consensus_444#1 TATTATCGCTGCTTATATTACTCTATTATTAGCATCCACTACTACTATTATTATTATTAT 446 *** * * * * ***** * * * *** * * consensus_444#0 T-CAGCNTTGGCACTTG--GCCNGTCG-TTTAACAAACGTTCCGTGACTTGGGGAAAAAC 772 consensus_444#1 TGCAGCGCTCGTGTATAACGCATGTTGCTTTTACACGCTCTCC-TCTCTTGTTGAA--AC 503 * **** * * * ** ** * *** *** * *** * **** *** ** consensus_444#0 CCTNGGGGNGGTTACCCCAAGCTTAATCCGGGCNTTGGCCAGGCGACAATTCCCCCGTTT 832 consensus_444#1 TAGTGGCTAAAGAAATCCAACCTCATCCT---CCTCCAACAGACATGAGCTGCTTTTGCA 560 ** * **** ** * * * * *** * * * * consensus_444#0 TTCGGCCACGGCTAGCGGTAAATACGGNAAGAAGGCCCGAACCGATTTGGGCCTTCCNAA 892 consensus_444#1 TTTTGTGGCAAGTGGCGGTAGTGTTGGTGATGATGATGAGATATGTACAAGAGTTTTAC- 619 ** * * * ****** ** * * * * * * ** consensus_444#0 AGTTTGGGCAGCNCNNGAATGGGCCACATGGAACCGGCCGTTAACGGGGGCATAACGCGG 952 consensus_444#1 ------------------------------------------------------------ consensus_444#0 CGGGTGTGA 961 consensus_444#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||