These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTGTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTAGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAGTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAATCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAAGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAGTCGCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATCGTTGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA] [+] EMBL BM610148 [CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTGTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTAGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAGTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAATCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAAGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAGTCGCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATCGTTGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA] [+] EMBL BM650614 [ cCGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGTATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATAGTGTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTTAGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAAGTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAATCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGAAGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCGGCGGCCGTTGCAACGGCCCTTGCAAAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGGATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGTCGTACTG ] consensusID : consensus_4441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGTGTATATTGTTTCGTTCGGGTGTTTATCTGTGTGTTGTTGTTGTTTTTGTTCGCAATCTTTCTGTAAAGTGTTAGTTTTTAAGAAATATGTATCCAAAAAACAACGAACCCGGTACGACAAAATAATAATAGTTGTTTTATGGAGGGTGGTGGGGAGGATGTAGTGCAGTGTAAATGGTGGGGGGGTGCCACAAACGATAGGGGAAGTTTGAAACCCACCCACCCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACACGTATTTCAAAACCGCACCGCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGAGCCTGCCCTTTTCGGGGGACGCAGAGCGTTTGTGTGCCATTTTGTGTGCTAAGAACCCCCCACAACCGCGGACGCTTAATCGCGCTCGCGTGTGTTCTAGTAGACGATTTTTCGGAAAAATGCCTGCCCAAAAACACAAAAC] [+] EMBL BM594646 [CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTGTATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGGTGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGTGTATATTGTTTCGTTCGGGTGTTTATCTGTGTGTTGTTGTTGTTTTTGTTCGCAATCTTTCTGTAAAGTGTTAGTTTTTAAGAAATATGTATCCAAAAAACAACGAACCCGGTACGACAAAATAATAATAGTTGTTTTATGGAGGGTGGTGGGGAGGATGTAGTGCAGTGTAAATGGTGGGGGGGTGCCACAAACGATAGGGGAAGTTTGAAACCCACCCACCCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACACGTATTTCAAAACCGCACCGCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGAGCCTGCCCTTTTCGGGGGACGCAGAGCGTTTGTGTGCCATTTTGTGTGCTAAGAACCCCCCACAACCGCGGACGCTTAATCGCGCTCGCGTGTGTTCTAGTAGACGATTTTTCGGAAAAATGCCTGCCCAAAAACACAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4441#0 CCGCCCACGCGTCCGTGACTTTGCTCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTG 60 consensus_4441#1 ----------------------CCGCGTGTACGGTACGGTTGGTCGTGTCTCGTGTGTTG 38 * *********************************** consensus_4441#0 TATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGG 120 consensus_4441#1 TATTTTTTTACGCAGCAGGCATCGCGATAGAGCCGTGGTCGTCGTAGCCAACAACGGTGG 98 ************************************************************ consensus_4441#0 TGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATA-GT 179 consensus_4441#1 TGGAAACAAACCAGCAAAACGGAGCCCCCCCACGGGGTTTGCGCTCTCCAGTGCATGTGT 158 ******************************************************** ** consensus_4441#0 GTAGAGTGTGTGCATCGCACAGTAACTTGATCGTAACTCACGTACGTGTTCAGCTGTGTT 239 consensus_4441#1 GTATATTGTTTCGTTCGGGTGTTTATCTGTGTGTTGTTGTTGTTTTTGTTC-GCAATCTT 217 *** * *** * *** * * ** ** * ** ***** ** * ** consensus_4441#0 AGCGGAGTGAATCATGTGATCTATCTACCAAGTTGTGCGCGATCGGTATACACGTGTAAA 299 consensus_4441#1 TCTGTAAAGTGTTAGTT--TTTAAGAAATATGTATCCAAAAAACAACGAACCCG-GTACG 274 * * * * * * * ** * * ** * * ** ** *** consensus_4441#0 GTGAAGTATTTAATAGTTTGTGTGTGTTAAAGAATAGAGCAAATAGAGGCGAATATTGAA 359 consensus_4441#1 ACAAAATAAT-AATAGTT-----GTTTTA-----TGGAGGGTGGTGGGGAGGATGTAGTG 323 ** ** * ******* ** *** * *** * ** * ** * * consensus_4441#0 TCAAAACAGGTCGTAAAAGTGTGTCGCTAAGCAAGTGGAGCATGTTGGGGATAAGCAAGA 419 consensus_4441#1 -CAGTGTAAATGGTGGGGGGGTGCCAC-AAACGA-TAGGGGAAGTTTGAAACCCACCCAC 380 ** * * ** * *** * * ** * * * * * * *** * * * consensus_4441#0 AGCCGGGTCCTCCGGTGCCGCCGCGCCCGAGTGCG-GCGGCCGTTGCAACGGCCCTTGCA 478 consensus_4441#1 CCCCCTCTTCCCCATTTTACCGGTCTTTAAGTTCGCACACGTATTTCAAAA--CCGCACC 438 ** * * ** * * * *** ** * ** *** ** * consensus_4441#0 AAACAGCGCGAAAACTCGCCCTCTCCAAATGGGGCCCCAAGACCATGCAATCCGACCGGG 538 consensus_4441#1 GCATACAATCACCGCGCGCCGCGTTGCCTTGGCGATAGAGGAGCCTGCCCTTTTCGGGGG 498 * * * * **** * *** * * ** * *** * *** consensus_4441#0 ATGATGACCGGGATGGCCACCTTAAAGCCGCCCCATCCGGGCCGTACTGTAGTGTACAAG 598 consensus_4441#1 ACGCAGAGCG---------TTTGTGTGCCATTTTGTGTGCTAAGAACCCCC---CACAA- 545 * * ** ** * *** * * * ** **** consensus_4441#0 TCGCCCGACTTTGATCCTCCCCCCGCAGGCAAGAAATCGAACGCACCAGCTGCAGGAATC 658 consensus_4441#1 CCGCGGACGCTTAATCGCGCTCGCGTGTGT------TCTAGTAGACGATTTTTCGGAAA- 598 *** ** *** * * ** * ** * ** * * **** consensus_4441#0 GTTGCAATGATCGCCCAACCTAAGCACGAAAACGGAACGCGATCTATCACGAAA 712 consensus_4441#1 -----AATGCCTGCCCAA---AAACACAAAAC---------------------- 622 **** ****** ** *** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||