cluster # 4445

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Anopheles gambiae
cluster # 4445 cluster # 4445 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4445#0 length = 720 sequences # 1

consensus_4445#1 length = 657 sequences # 2

consensusID : consensus_4445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [GAGGCAGAATTCCGGCACGATNGGACCTGGCCCAAAGAGGACATCACAAATCGCCTGCATCGTCCACGAATCTTCAATGGGAAAAATGCGACAAATGGAGCAAAAGTACGACCTGTCCAAGTGTCACACGTACAATTAGAAAAGCTCGTTCGCGTTCTGGGTCGTGCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTTTGCCTAACGCTGTCCATCACGGCGATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATCAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGCTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTCGAATCGGAATGGCAATACGCACAAGCAAGAATTCAGCTCACGCGCACAGGCACCTTACCTGAAGGGCATCAACCATTTGCGATGTGAAGGATCCGGCAACGGAGCAGGCAGGTGTNTGGGACGTTGCGCNCCCAGTACAACATGCCCCAAGGGGCGATNGATCCTGCAGGGCCCCGATCNTGGGTGGACACAGGTGGGCCGGGATTTTGACGGGCAGACCCATTTAAAGCGGATANCGGCTTGAAAGCTGNCAGACGGCGCAGACAAAGGGCGTTTANANNTCCAAAGGGGCCNACGGGAAGGAATTTCGCAAT]

[+] EMBL BX467926             [GAGGCAGAATTCCGGCACGATNGGACCTGGCCCAAAGAGGACATCACAAATCGCCTGCATCGTCCACGAATCTTCAATGGGAAAAATGCGACAAATGGAGCAAAAGTACGACCTGTCCAAGTGTCACACGTACAATTAGAAAAGCTCGTTCGCGTTCTGGGTCGTGCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTTTGCCTAACGCTGTCCATCACGGCGATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATCAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGCTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTCGAATCGGAATGGCAATACGCACAAGCAAGAATTCAGCTCACGCGCACAGGCACCTTACCTGAAGGGCATCAACCATTTGCGATGTGAAGGATCCGGCAACGGAGCAGGCAGGTGTNTGGGACGTTGCGCNCCCAGTACAACATGCCCCAAGGGGCGATNGATCCTGCAGGGCCCCGATCNTGGGTGGACACAGGTGGGCCGGGATTTTGACGGGCAGACCCATTTAAAGCGGATANCGGCTTGAAAGCTGNCAGACGGCGCAGACAAAGGGCGTTTANANNTCCAAAGGGGCCNACGGGAAGGAATTTCGCAAT]




>consensus_4445#0
GAGGCAGAATTCCGGCACGATNGGACCTGGCCCAAAGAGGACATCACAAATCGCCTGCAT
CGTCCACGAATCTTCAATGGGAAAAATGCGACAAATGGAGCAAAAGTACGACCTGTCCAA
GTGTCACACGTACAATTAGAAAAGCTCGTTCGCGTTCTGGGTCGTGCTGGTGCTGCTGTT
CTGCTTGGCGCTGGGCAACCTTTGCCTAACGCTGTCCATCACGGCGATACTGCGAATCTA
CCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATCAAGTTTTACGGCAA
CATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGCTTCTACGATGAGCC
GCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTCGAATCGGAATGGCA
ATACGCACAAGCAAGAATTCAGCTCACGCGCACAGGCACCTTACCTGAAGGGCATCAACC
ATTTGCGATGTGAAGGATCCGGCAACGGAGCAGGCAGGTGTNTGGGACGTTGCGCNCCCA
GTACAACATGCCCCAAGGGGCGATNGATCCTGCAGGGCCCCGATCNTGGGTGGACACAGG
TGGGCCGGGATTTTGACGGGCAGACCCATTTAAAGCGGATANCGGCTTGAAAGCTGNCAG
ACGGCGCAGACAAAGGGCGTTTANANNTCCAAAGGGGCCNACGGGAAGGAATTTCGCAAT

consensusID : consensus_4445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [CCGCAAAATTTTTCACTTTTCCACGGTGAATTTTCTTCCCTGACCCGAAGAGGACATCAATATCGTCCGCGCACCGTCCTCGAATCTTCAATGGGAAAAATGCGACAAACGGAGCAAAAGTACGACCTGTCCAAGTGTCACACGTACAATGAGAAAAGCTCGTTCGCGTTCTGGGTCGTGCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTCTGCCTAACGCTGTCCATCACGGCGATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATCAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGCTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTCAATCGGAATGGCAATACGCACAACAAAATTCAGCTCACGCGCACAGGCACCTTCCTGAAGGGCATCAACCATTTCGATGTGAAGGATCCGGCAACGGGCAGGCAGGTGTTTGGGACGTTGCGCCCCCACTACAACATGCCCCAGGGGGCGATGATCCTGCAGGCCCATCTGGTGAACAGTGGCCGCATTGCGGCGCCCATTAACGATACGCTGAAGCTGCAGACGCGCAACAAGCTG]

[+] EMBL BM634208             [CCGCAAAATTTTTCACTTTTCCACGGTGAATTTTCTTCCCTGACCCGAAGAGGACATCAATATCGTCCGCGCACCGTCCTCGAATCTTCAATGGGAAAAATGCGACAAACGGAGCAAAAGTACGACCTGTCCAAGTGTCACACGTACAATGAGAAAAGCTCGTTCGCGTTCTGGGTCGTGCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTCTGCCTAACGCTGTCCATCACGGCGATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATCAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGCTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTCAATCGGAATGGCAATACGCACAACAAAATTCAGCTCACGCGCACAGGCACCTTCCTGAAGGGCATCAACCATTTCGATGTGAAGGATCCGGCAACGGGCAGGCAGGTGTTTGGGACGTTGCGCCCCCACTACAACATGCCCCAGGGGGCGATGATCCTGCAGGCCCATCTGGTGAACAGTGGCCGCATTGCGGCGCCCATTAACGATACGCTGAAGCTGCAGACGCGCAACAAGCTG]
[+] EMBL BM651769             [                                           CCGGAAGAGGACATCAATATCGTCCGCGCACCGTCCTCGAATCTTCAATGGGAAAAATGCGACAAACGGAGCAAAAGTACGACCTGTCCAAGTGTCACACGTACAATGAGAAAAGCTCGTTCGCGTTCTGGGTCGTGCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTCTGCCTAACGCTGTCCATCACGGCGATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATCAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGCTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTCAATCGGAATGGCAATACGCACAACAAA                                                                                                                                                                                                                  ]




>consensus_4445#1
CCGCAAAATTTTTCACTTTTCCACGGTGAATTTTCTTCCCTGACCCGAAGAGGACATCAA
TATCGTCCGCGCACCGTCCTCGAATCTTCAATGGGAAAAATGCGACAAACGGAGCAAAAG
TACGACCTGTCCAAGTGTCACACGTACAATGAGAAAAGCTCGTTCGCGTTCTGGGTCGTG
CTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTCTGCCTAACGCTGTCCATCACGGCG
ATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGATC
AAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAGC
TTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGTC
AATCGGAATGGCAATACGCACAACAAAATTCAGCTCACGCGCACAGGCACCTTCCTGAAG
GGCATCAACCATTTCGATGTGAAGGATCCGGCAACGGGCAGGCAGGTGTTTGGGACGTTG
CGCCCCCACTACAACATGCCCCAGGGGGCGATGATCCTGCAGGCCCATCTGGTGAACAGT
GGCCGCATTGCGGCGCCCATTAACGATACGCTGAAGCTGCAGACGCGCAACAAGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4445#0      ------GAGGCAGAATTCCGGCACGATNGGA-------CCTGGCCCAAAGAGGACATCAC 47
consensus_4445#1      CCGCAAAATTTTTCACTTTTCCACGGTGAATTTTCTTCCCTGACCCGAAGAGGACATCA- 59
                             *      * *    **** *           **** *** ************ 

consensus_4445#0      AAATCGCCTGC--ATCGTCCACGAATCTTCAATGGGAAAAATGCGACAAATGGAGCAAAA 105
consensus_4445#1      ATATCGTCCGCGCACCGTCCTCGAATCTTCAATGGGAAAAATGCGACAAACGGAGCAAAA 119
                      * **** * **  * ***** ***************************** *********

consensus_4445#0      GTACGACCTGTCCAAGTGTCACACGTACAATTAGAAAAGCTCGTTCGCGTTCTGGGTCGT 165
consensus_4445#1      GTACGACCTGTCCAAGTGTCACACGTACAATGAGAAAAGCTCGTTCGCGTTCTGGGTCGT 179
                      ******************************* ****************************

consensus_4445#0      GCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTTTGCCTAACGCTGTCCATCACGGC 225
consensus_4445#1      GCTGGTGCTGCTGTTCTGCTTGGCGCTGGGCAACCTCTGCCTAACGCTGTCCATCACGGC 239
                      ************************************ ***********************

consensus_4445#0      GATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGAT 285
consensus_4445#1      GATACTGCGAATCTACCGCGGGATGGAAAACATCGAGCTGATACAGGACGCCGATTCGAT 299
                      ************************************************************

consensus_4445#0      CAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAG 345
consensus_4445#1      CAAGTTTTACGGCAACATCGATTTCGACCGGGTGTACAAACAGGATGGGCTGCTGGAGAG 359
                      ************************************************************

consensus_4445#0      CTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGT 405
consensus_4445#1      CTTCTACGATGAGCCGCTGGAGCTGGCCGGCGACGATGGGGACATCTCGATCAATCTCGT 419
                      ************************************************************

consensus_4445#0      CGAATCGGAATGGCAATACGCACAAGCAAGAATTCAGCTCACGCGCACAGGCACCTTACC 465
consensus_4445#1      C-AATCGGAATGGCAATACGCACAA--CAAAATTCAGCTCACGCGCACAGGCACCTT-CC 475
                      * ***********************   * *************************** **

consensus_4445#0      TGAAGGGCATCAACCATTTGCGATGTGAAGGATCCGGCAACGGAGCAGGCAGGTGTNTGG 525
consensus_4445#1      TGAAGGGCATCAACCATTT-CGATGTGAAGGATCCGGCAACGG-GCAGGCAGGTGTTTGG 533
                      ******************* *********************** ************ ***

consensus_4445#0      GACGTTGCGCNCCCAGTACAACATGCCCCAAGGGGCGATNGATCCTGCAGGGCCCCGATC 585
consensus_4445#1      GACGTTGCGCCCCCACTACAACATGCCCCAGGGGGCGATG-ATCCTGCAGGCCC---ATC 589
                      ********** **** ************** ********  ********** **   ***

consensus_4445#0      NTGGGTGGACACAGGTGGGCCGGGATTTTGACGGGCAGACCCATTTAAAGCGGATANCGG 645
consensus_4445#1      T--GGTGAACA---GTGGCC--GCATTGCGGCG------CCCATTAACGATACGCTGAAG 636
                         **** ***   **** *  * ***  * **      ****** *            *

consensus_4445#0      CTTGAAAGCTGNCAGACGGCGCAGACAAAGGGCGTTTANANNTCCAAAGGGGCCNACGGG 705
consensus_4445#1      CTGCAGACGCGCAACAAGCTG--------------------------------------- 657
                      **  * *   *  * * *  *                                       

consensus_4445#0      AAGGAATTTCGCAAT 720
consensus_4445#1      ---------------