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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence
[CTCAGGCAGAATCCCCCGAGGTTTTAGCTTATTTGTCTGGACAACGAGTTTCGTTAGACGTGTTTTGTTTCGTTTATTTTAGAACAATTTCCCTCGCCCTTCCCTCGTATTCCCTGCCTCAGGTTTCCTTTCCCAAGTGTTTTATGTCTTAGTTCCCAACTTTCCTTCACTGTCCAAATTTTAGTTTGTTGAGCCAAAATGTTTAGTGTTTTTGGAAGAAATAGCAGAATGGTTGTTAAAATTTGTTCTGTTAAAATTATTTGTTTGTCTATTAAAAAAAGATGGCAAAACTAGACAAAAAACGAGATTGTTACCGATATTATCTGTGTGTTAGAAGTAATGTTAGAAGAAGCTCCACTAGGATTGAGATTTATGTGTTTGTTGATTTGTTTCTCCGTTGTCATGTTGTCAATCTTCATTCTGATGAGATTATTCGATGAGATAACCCAATTACTGCTAGCTATTTGCAATCGAGCGCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGATAGCAAGAACAGCTAAGTTTAACGCTTTTCATCCGTTGAANAGTGTGATGTCTTATAAGGGATTAAACTGTCCTACCAGTAGTGTCATCANCTCCTATAAGCATTCTGTTGCGTANGTATGTCTCAAAGCTCAAACACTGACTAACTAACAACAAACAAACAAAACGCTTCCACAATCAGCTGTACAATACGTGTGTGTGAGAGATTGCGTATTCCGGGACCATTAGCTAATACACAGGCCTAGGCGTATGATCCTGTCGTCAGCCATTGGTAGACGGGACGGACACGCGGCTCCAATCCTAATCTNAAGGGCTATCTGTAGTNTCGTANCCGNTATTCAGTTCAAANNTTCNCATNGNTCAAACAGCCATNACTTCCCGGTACCTCTGGACCCATTACCTTCTAGCGCNTGCCGCACAAAGGGCGNNTGGATTTCAGGGG]
[+] EMBL AL934823 [CTCAGGCAGAATCCCCCGAGGTTTTAGCTTATTTGTCTGGACAACGAGTTTCGTTAGACGTGTTTTGTTTCGTTTATTTTAGAACAATTTCCCTCGCCCTTCCCTCGTATTCCCTGCCTCAGGTTTCCTTTCCCAAGTGTTTTATGTCTTAGTTCCCAACTTTCCTTCACTGTCCAAATTTTAGTTTGTTGAGCCAAAATGTTTAGTGTTTTTGGAAGAAATAGCAGAATGGTTGTTAAAATTTGTTCTGTTAAAATTATTTGTTTGTCTATTAAAAAAAGATGGCAAAACTAGACAAAAAACGAGATTGTTACCGATATTATCTGTGTGTTAGAAGTAATGTTAGAAGAAGCTCCACTAGGATTGAGATTTATGTGTTTGTTGATTTGTTTCTCCGTTGTCATGTTGTCAATCTTCATTCTGATGAGATTATTCGATGAGATAACCCAATTACTGCTAGCTATTTGCAATCGAGCGCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGATAGCAAGAACAGCTAAGTTTAACGCTTTTCATCCGTTGAANAGTGTGATGTCTTATAAGGGATTAAACTGTCCTACCAGTAGTGTCATCANCTCCTATAAGCATTCTGTTGCGTANGTATGTCTCAAAGCTCAAACACTGACTAACTAACAACAAACAAACAAAACGCTTCCACAATCAGCTGTACAATACGTGTGTGTGAGAGATTGCGTATTCCGGGACCATTAGCTAATACACAGGCCTAGGCGTATGATCCTGTCGTCAGCCATTGGTAGACGGGACGGACACGCGGCTCCAATCCTAATCTNAAGGGCTATCTGTAGTNTCGTANCCGNTATTCAGTTCAAANNTTCNCATNGNTCAAACAGCCATNACTTCCCGGTACCTCTGGACCCATTACCTTCTAGCGCNTGCCGCACAAAGGGCGNNTGGATTTCAGGGG]
consensusID : consensus_4448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence
[GCCAAAATGTTTAGTGTTTTTGGAAGAAATAGCAGAATGGTTGTTAAAATTTGTTTGTTAAAATTATTTGTTNGTCTATTAAAAAAAGATGGCAAAACTAGACAAAAAACGAGATTGTTACCGATATTATCTGTGTGTTAGAAGTAATGTTAGAAGAAGCTCCACTAGGATTGAGATTTATGTGTTTTGTTGATTTGTTTCTCCGTTTTGTTATGTTGTTCAATCTTCATTTGATGAGATTATTCGATGAGATAACCCAATTACTGCTAGCTATTTGCAATCGAGCGCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGATAGAAGAAAGCTAAGTTTAACGCTTTTCATCCGTTGAAAGTGTGATGTCTTATAAGGGATTAAACTGTTTTTTGTGTGTTTTTTCCTATAAGCATTCTGTTGCGTTGTTGTCTCAAAGCTCAAACACTGACTAACTAACAAACAAACAAACAAAACGCTTCCACAATCAGCTGTAAATACGTGTGTGTGAGAGATTGCGTATTTTTGGGACCATTAGCTAATACACAGCCTAGCGTATTATCCTGTCGTCGCATTGTAGACGGACGGACACGCGCTCAATCTAATCTAAGGCTATTGTTTCGTTTCGTATTAGTTCAAATTTATTTAAAACCATAATTCCGTCCTCTGACCATTCCTTCTAGCGCTTGCCGCACAAGGGGGTGGTTTCAGGGCCAGGAGAACGCGGCAAGGATAGACAATCGTTA]
[-] EMBL BX628246 [GCCAAAATGTTTAGTGTTTTTGGAAGAAATAGCAGAATGGTTGTTAAAATTTGTTTGTTAAAATTATTTGTTNGTCTATTAAAAAAAGATGGCAAAACTAGACAAAAAACGAGATTGTTACCGATATTATCTGTGTGTTAGAAGTAATGTTAGAAGAAGCTCCACTAGGATTGAGATTTATGTGTTTTGTTGATTTGTTTCTCCGTTTTGTTATGTTGTTCAATCTTCATTTGATGAGATTATTCGATGAGATAACCCAATTACTGCTAGCTATTTGCAATCGAGCGCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGATAGAAGAAAGCTAAGTTTAACGCTTTTCATCCGTTGAAAGTGTGATGTCTTATAAGGGATTAAACTGTTTTTTGTGTGTTTTTTCCTATAAGCATTCTGTTGCGTTGTTGTCTCAAAGCTCAAACACTGACTAACTAACAAACAAACAAACAAAACGCTTCCACAATCAGCTGTAAATACGTGTGTGTGAGAGATTGCGTATTTTTGGGACCATTAGCTAATACACAGCCTAGCGTATTATCCTGTCGTCGCATTGTAGACGGACGGACACGCGCTCAATCTAATCTAAGGCTATTGTTTCGTTTCGTATTAGTTCAAATTTATTTAAAACCATAATTCCGTCCTCTGACCATTCCTTCTAGCGCTTGCCGCACAAGGGGGTGGTTTCAGGGCCAGGAGAACGCGGCAAGGATAGACAATCGTTA]
[+] EMBL BX617895 [ CAATCGAGCGCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGAAAGAAGAAAGCTAAGTTTAACGCTTTTCATCCGTTGAAAGTGGGATG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4448#0 CTCAGGCAGAATCCCCCGAGGTTTTAGCTTATTTGTCTGGACAACGAGTTTCGTTAGACG 60
consensus_4448#1 ------------------------------------------------------------
consensus_4448#0 TGTTTTGTTTCGTTTATTTTAGAACAATTTCCCTCGCCCTTCCCTCGTATTCCCTGCCTC 120
consensus_4448#1 ------------------------------------------------------------
consensus_4448#0 AGGTTTCCTTTCCCAAGTGTTTTATGTCTTAGTTCCCAACTTTCCTTCACTGTCCAAATT 180
consensus_4448#1 ------------------------------------------------------------
consensus_4448#0 TTAGTTTGTTGAGCCAAAATGTTTAGTGTTTTTGGAAGAAATAGCAGAATGGTTGTTAAA 240
consensus_4448#1 ------------GCCAAAATGTTTAGTGTTTTTGGAAGAAATAGCAGAATGGTTGTTAAA 48
************************************************
consensus_4448#0 ATTTGTTCTGTTAAAATTATTTGTTTGTCTATTAAAAAAAGATGGCAAAACTAGACAAAA 300
consensus_4448#1 ATTTGTT-TGTTAAAATTATTTGTTNGTCTATTAAAAAAAGATGGCAAAACTAGACAAAA 107
******* ***************** **********************************
consensus_4448#0 AACGAGATTGTTACCGATATTATCTGTGTGTTAGAAGTAATGTTAGAAGAAGCTCCACTA 360
consensus_4448#1 AACGAGATTGTTACCGATATTATCTGTGTGTTAGAAGTAATGTTAGAAGAAGCTCCACTA 167
************************************************************
consensus_4448#0 GGATTGAGATTTATGTGTTT-GTTGATTTGTTTCTCCGTT--GTCATGTTGT-CAATCTT 416
consensus_4448#1 GGATTGAGATTTATGTGTTTTGTTGATTTGTTTCTCCGTTTTGTTATGTTGTTCAATCTT 227
******************** ******************* ** ******* *******
consensus_4448#0 CATTCTGATGAGATTATTCGATGAGATAACCCAATTACTGCTAGCTATTTGCAATCGAGC 476
consensus_4448#1 CATT-TGATGAGATTATTCGATGAGATAACCCAATTACTGCTAGCTATTTGCAATCGAGC 286
**** *******************************************************
consensus_4448#0 GCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGATAGCAAGAACAGCTAA 536
consensus_4448#1 GCAAAATTTGCCATTAGTTCGTAGGGAATCAAATTCATAGAAGATAG-AAGAA-AGCTAA 344
*********************************************** ***** ******
consensus_4448#0 GTTTAACGCTTTTCATCCGTTGAANAGTGTGATGTCTTATAAGGGATTAAACTGTCCTAC 596
consensus_4448#1 GTTTAACGCTTTTCATCCGTTGAAA-GTGTGATGTCTTATAAGGGATTAAACTGTTTT-- 401
************************ ***************************** *
consensus_4448#0 CAGTAGTGTCATCANCTCCTATAAGCATTCTGTTGCGTANGTATGTCTCAAAGCTCAAAC 656
consensus_4448#1 ---TTGTGT-GTTTTTTCCTATAAGCATTCTGTTGCGT-TGT-TGTCTCAAAGCTCAAAC 455
* **** * ********************** ** *****************
consensus_4448#0 ACTGACTAACTAACAA-CAAACAAACAAAACGCTTCCACAATCAGCTGTACAATACGTGT 715
consensus_4448#1 ACTGACTAACTAACAAACAAACAAACAAAACGCTTCCACAATCAGCTGTA-AATACGTGT 514
**************** ********************************* *********
consensus_4448#0 GTGTGAGAGATTGCGTATTCC-GGGACCATTAGCTAATACACAGGCCTAGGCGTATGATC 774
consensus_4448#1 GTGTGAGAGATTGCGTATTTTTGGGACCATTAGCTAATACACAG-CCTAG-CGTATTATC 572
******************* ********************** ***** ***** ***
consensus_4448#0 CTGTCGTCAGCCATTGGTAGACGGGACGGACACGCGGCTCCAATCCTAATCTNAAGGGCT 834
consensus_4448#1 CTGTCGTCG--CATTG-TAGACGG-ACGGACACGCG--CTCAATC-TAATCTAA--GGCT 623
******** ***** ******* *********** ***** ****** * ****
consensus_4448#0 ATC-TGTAGTNTCGTANCCGNT--ATTCAGTTCAAANNTTCNCATNGNTCAAACAGCCAT 891
consensus_4448#1 ATTGTTTCGTTTCGTATTAGTTCAAATTTATTTAAAACCATAATTCCGTCCTCTGACCAT 683
** * * ** ***** * * * * ** *** * ** ****
consensus_4448#0 NACTTCCCGGTACCTCTGGACCCATTACC--TTCTAGCGCNTGCCGCACAAAGGGCGNNT 949
consensus_4448#1 TCCTTCTAGCGCTTGCCGCACAAGGGGGTGGTTTCAGGGCCAGGAGAACGCGGCAAGGAT 743
**** * * * ** ** ** ** * * ** * * *
consensus_4448#0 GGATTTCAGGGG 961
consensus_4448#1 AGACAATCGTTA 755
** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||