cluster # 4449

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Anopheles gambiae
cluster # 4449 cluster # 4449 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4449#0 length = 939 sequences # 1

consensus_4449#1 length = 518 sequences # 2

consensusID : consensus_4449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 939
fasta sequence

                              [CCACCACNCACCCCACCCCANCNACACANACAACNACAACCCNNAACACAACACCACCCACACACCNCAAAACNACCCACACACNCNCCCCCAACATGCCCTCAGCNACAAATCCCCAGGTTAATCGATCATAAATAGCNCTCCAACGTACCACAAACACNTACNTGTGAACGGGACGANTTAACGAAAAAAGTTCTCCATTACCAGTTNGCGGACGATACTTCTACGCTAGTATNAAGTCATGCTGCAACGGTAGCGTTTTACGAGCTGTTGAGCGTANATATGGTACAGCAAGAGTGGTTAGCGTTATGTTTTAAGGCGGGACCGGTAAAAACTCTCCTTCTGCTAGGATACAGCTATCCTATTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCATTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTTTTTTTATTATCTACAATCCATATTGTCCATCGCGAAGATGTATCGTGCGAACAAACGTAAACTGGACTTTTNTTCAACTGTGGTTGTATTATCGCATAGTTGGTAGTCAATACAATACGTAGAGAGCTGTAGCTACTACCTNGGCAATTGGACANACCCAAGGAGCAGATAGGGGTTATGTTCCCCGGTTCGACATGNGCCCAAAAAACCGGCACTTNGGGGGGGTTACAACAAGAAAGCCGGGGCGCACGGNCGANACAGTATCATGANAGCCACANAGTATGNTAGGCACTACATTCCCAAACACGTGTCNTTGTTTATAANCCCCTGGANCNAAGTTTAAAAATGTGCCCCTTTCATCNCGGCAAACACATTCAAATTTGGAAACCNGAAACAAAANCGAAANGTTGGGTTTGGCCCCAAACACACAGAGTNAATTACAGGGGGNAATTCCCGTGTTCACGTTCCTGGAAA]

[+] EMBL AL933599             [CCACCACNCACCCCACCCCANCNACACANACAACNACAACCCNNAACACAACACCACCCACACACCNCAAAACNACCCACACACNCNCCCCCAACATGCCCTCAGCNACAAATCCCCAGGTTAATCGATCATAAATAGCNCTCCAACGTACCACAAACACNTACNTGTGAACGGGACGANTTAACGAAAAAAGTTCTCCATTACCAGTTNGCGGACGATACTTCTACGCTAGTATNAAGTCATGCTGCAACGGTAGCGTTTTACGAGCTGTTGAGCGTANATATGGTACAGCAAGAGTGGTTAGCGTTATGTTTTAAGGCGGGACCGGTAAAAACTCTCCTTCTGCTAGGATACAGCTATCCTATTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCATTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTTTTTTTATTATCTACAATCCATATTGTCCATCGCGAAGATGTATCGTGCGAACAAACGTAAACTGGACTTTTNTTCAACTGTGGTTGTATTATCGCATAGTTGGTAGTCAATACAATACGTAGAGAGCTGTAGCTACTACCTNGGCAATTGGACANACCCAAGGAGCAGATAGGGGTTATGTTCCCCGGTTCGACATGNGCCCAAAAAACCGGCACTTNGGGGGGGTTACAACAAGAAAGCCGGGGCGCACGGNCGANACAGTATCATGANAGCCACANAGTATGNTAGGCACTACATTCCCAAACACGTGTCNTTGTTTATAANCCCCTGGANCNAAGTTTAAAAATGTGCCCCTTTCATCNCGGCAAACACATTCAAATTTGGAAACCNGAAACAAAANCGAAANGTTGGGTTTGGCCCCAAACACACAGAGTNAATTACAGGGGGNAATTCCCGTGTTCACGTTCCTGGAAA]




>consensus_4449#0
CCACCACNCACCCCACCCCANCNACACANACAACNACAACCCNNAACACAACACCACCCA
CACACCNCAAAACNACCCACACACNCNCCCCCAACATGCCCTCAGCNACAAATCCCCAGG
TTAATCGATCATAAATAGCNCTCCAACGTACCACAAACACNTACNTGTGAACGGGACGAN
TTAACGAAAAAAGTTCTCCATTACCAGTTNGCGGACGATACTTCTACGCTAGTATNAAGT
CATGCTGCAACGGTAGCGTTTTACGAGCTGTTGAGCGTANATATGGTACAGCAAGAGTGG
TTAGCGTTATGTTTTAAGGCGGGACCGGTAAAAACTCTCCTTCTGCTAGGATACAGCTAT
CCTATTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCA
TTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTTTTTTTATTATCTACA
ATCCATATTGTCCATCGCGAAGATGTATCGTGCGAACAAACGTAAACTGGACTTTTNTTC
AACTGTGGTTGTATTATCGCATAGTTGGTAGTCAATACAATACGTAGAGAGCTGTAGCTA
CTACCTNGGCAATTGGACANACCCAAGGAGCAGATAGGGGTTATGTTCCCCGGTTCGACA
TGNGCCCAAAAAACCGGCACTTNGGGGGGGTTACAACAAGAAAGCCGGGGCGCACGGNCG
ANACAGTATCATGANAGCCACANAGTATGNTAGGCACTACATTCCCAAACACGTGTCNTT
GTTTATAANCCCCTGGANCNAAGTTTAAAAATGTGCCCCTTTCATCNCGGCAAACACATT
CAAATTTGGAAACCNGAAACAAAANCGAAANGTTGGGTTTGGCCCCAAACACACAGAGTN
AATTACAGGGGGNAATTCCCGTGTTCACGTTCCTGGAAA

consensusID : consensus_4449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 518
fasta sequence

                              [CCGCTATCCTTTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCATTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTCTTTTTTTTATTATCTACAATCCATATTGTCCATCGCAAGATGTATCGTGCGAAAAACGTAAACTGGTCTTTTTTTTCAACTGTGGTTGTATTATCGATAGTTGGTAGTAATACAATCGTGAGAGTGAGCTCTACCTGGCATGCACAGAGAGATGGTTTTCCGTGAGGCAAACGATGGGTAAAAACGGCAGCAATTTCAATTTGATTTCAATCTTACCGAATAATCCTACGAATATGACGAAACAATGTGCACAATATAGGATCGTATCGAATCGGGCAGAAATATTGAGAGATCGAGAGACTAACCAAGATAGTCGTTGAGCCGTTGAGCGGCCGCTAACGATGGCACGGCGGGAAAACGGTCCGACGAAATGTTCTTTTATTTATGGTTTAATTTTAAAGACTCTT]

[+] EMBL BM590786             [CCGCTATCCTTTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCATTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTCTTTTTTTTATTATCTACAATCCATATTGTCCATCGCAAGATGTATCGTGCGAAAAACGTAAACTGGTCTTTTTTTTCAACTGTGGTTGTATTATCGATAGTTGGTAGTAATACAATCGTGAGAGTGAGCTCTACCTGGCATGCACAGAGAGATGGTTTTCCGTGAGGCAAACGATGGGTAAAAACGGCAGCAATTTCAATTTGATTTCAATCTTACCGAATAATCCTACGAATATGACGAAACAATGTGCACAATATAGGATCGTATCGAATCGGGCAGAAATATTGAGAGATCGAGAGACTAACCAAGATAGTCG                                                                                           ]
[+] EMBL BX616202             [                                                          CAGCAGCATTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATT  TTTTTTTTATTATCTACAATCCATATTGTCCATCGCAAGATGTATCGTGCGAAAAACGTAAACTGGAC TTTTTTTCAACTGTGGTTGTATTATCGATAGTTGGTAGTAATACAATCGTGAGAGCGAGCTCTACCTGGCATGCACAGAGAGATGGTTTTCCGTGAGGCAAACGATGGGTAAAAACGGCAGCAATTTCAATTTGATTTCAATCTTACCGAATAATCCTACGAATATGACGAAACAATGTGCACAATATAGGATCGTATCGAATCGGGCGGAAATATTGAAAGATCGAGAGACTAACCAAGATAGTCGTTGAGCCGTTGAGCGGCCGCTAACGATGGCACGGCGGGAAAACGGTCCGACGAAATGTTCTTTTATTTATGGTTTAATTTTAAAGACTCTT]




>consensus_4449#1
CCGCTATCCTTTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACA
GCAGCATTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTCTTTTTTTTA
TTATCTACAATCCATATTGTCCATCGCAAGATGTATCGTGCGAAAAACGTAAACTGGTCT
TTTTTTTCAACTGTGGTTGTATTATCGATAGTTGGTAGTAATACAATCGTGAGAGTGAGC
TCTACCTGGCATGCACAGAGAGATGGTTTTCCGTGAGGCAAACGATGGGTAAAAACGGCA
GCAATTTCAATTTGATTTCAATCTTACCGAATAATCCTACGAATATGACGAAACAATGTG
CACAATATAGGATCGTATCGAATCGGGCAGAAATATTGAGAGATCGAGAGACTAACCAAG
ATAGTCGTTGAGCCGTTGAGCGGCCGCTAACGATGGCACGGCGGGAAAACGGTCCGACGA
AATGTTCTTTTATTTATGGTTTAATTTTAAAGACTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4449#0      CCACCACNCACCCCACCCCANCNACACANACAACNACAACCCNNAACACAACACCACCCA 60
consensus_4449#1      ------------------------------------------------------------
                                                                                  

consensus_4449#0      CACACCNCAAAACNACCCACACACNCNCCCCCAACATGCCCTCAGCNACAAATCCCCAGG 120
consensus_4449#1      ------------------------------------------------------------
                                                                                  

consensus_4449#0      TTAATCGATCATAAATAGCNCTCCAACGTACCACAAACACNTACNTGTGAACGGGACGAN 180
consensus_4449#1      ------------------------------------------------------------
                                                                                  

consensus_4449#0      TTAACGAAAAAAGTTCTCCATTACCAGTTNGCGGACGATACTTCTACGCTAGTATNAAGT 240
consensus_4449#1      ------------------------------------------------------------
                                                                                  

consensus_4449#0      CATGCTGCAACGGTAGCGTTTTACGAGCTGTTGAGCGTANATATGGTACAGCAAGAGTGG 300
consensus_4449#1      ------------------------------------------------------------
                                                                                  

consensus_4449#0      TTAGCGTTATGTTTTAAGGCGGGACCGGTAAAAACTCTCCTTCTGCTAGGATACAGCTAT 360
consensus_4449#1      -----------------------------------------------------CCGCTAT 7
                                                                           * *****

consensus_4449#0      CCTATTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCA 420
consensus_4449#1      CCT-TTTTATGTATTGGATCAAAGCTTCCCTTCTGAGCATGGGAGAGTTAAACAGCAGCA 66
                      *** ********************************************************

consensus_4449#0      TTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTT---TTTTTTATTATCT 477
consensus_4449#1      TTCCTTTGTTCAGTACAATATGCCACGGGGAAGAGTTCGCATTTCTTTTTTTTATTATCT 126
                      ********************************************   *************

consensus_4449#0      ACAATCCATATTGTCCATCGCGAAGATGTATCGTGCGAACAAACGTAAACTGGACTTTTN 537
consensus_4449#1      ACAATCCATATTGTCCATCGC-AAGATGTATCGTGCGAA-AAACGTAAACTGGTCTTTTT 184
                      ********************* ***************** ************* ***** 

consensus_4449#0      TT-CAACTGTGGTTGTATTATCGCATAGTTGGTAGTCAATACAATACGTAGAGAGCTGTA 596
consensus_4449#1      TTTCAACTGTGGTTGTATTATCG-ATAGTTGGTAGT-AATACAAT-CGT-GAGAGTG--A 238
                      ** ******************** ************ ******** *** *****    *

consensus_4449#0      GCTACTACCTNGGCAATTGGACANACCCAAGGAGCAGATAGGGGTTATGTTCCCCGGTTC 656
consensus_4449#1      GCT-CTACCTGG---------CATGCACAGAGAGATGGT--------TTTCCGTGAGGCA 280
                      *** ****** *         **  * **  ***  * *        * * *    *   

consensus_4449#0      GAC-ATGNGCCCAAAAAACCGGCACTTNGGGGGGGTTACAACAAGAAAGCCGGGGCGCAC 715
consensus_4449#1      AACGATGGGTAAAAACGGCAGCAATTTCAATTTGATTTCAATCTTACCGAATAATCCTAC 340
                       ** *** *   ***   * *  * **      * ** ***    *  *      *  **

consensus_4449#0      GGNCGANACAGTATCATGANAGCCACANAGTATGNTAGGCACTACATTCCCAAACACGTG 775
consensus_4449#1      GAATATGACGAAACAATGTGCACAATATAGGATCGTATCGAATCGGG---CAGAAATATT 397
                      *      **   *  ***    * * * ** **  **   * *       ** * *  * 

consensus_4449#0      TCNTTGTTTATAANCCCCTGGANCNAAGTTTAAAAATGTGCCCCTTTCATCNCGGCAAAC 835
consensus_4449#1      GAGAGATCGAGAGACT-----AACCAAGATAGTCGTTGAGCCG-TTGAGCGGCCGCTAAC 451
                            *  * *  *      * * *** *      ** ***  **      * ** ***

consensus_4449#0      ACATTCAAATTTGGAAACCNGAAACAAAANCGAAANGTTGGGTTTGGCCCCAAACACACA 895
consensus_4449#1      GATGGCACGGCGGGAAAACGGTCCGACGAAATGTTCTTTTATTTATGGTTTAATTTTAAA 511
                           **     ***** * *    *  *        **   **  *    **    * *

consensus_4449#0      GAGTNAATTACAGGGGGNAATTCCCGTGTTCACGTTCCTGGAAA 939
consensus_4449#1      GACTCTT------------------------------------- 518
                      ** *